Locus 3980

Sequence ID 2R_DroMel_CAF1
Location 13,134,021 – 13,134,119
Length 98
Max. P 0.636205
window6423

overview

Window 3

Location 13,134,021 – 13,134,119
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.10
Mean single sequence MFE -22.39
Consensus MFE -15.26
Energy contribution -15.32
Covariance contribution 0.06
Combinations/Pair 1.39
Mean z-score -1.29
Structure conservation index 0.68
SVM decision value 0.21
SVM RNA-class probability 0.636205
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13134021 98 - 20766785
UGGCUCUGAUUAUAUCUAAUGUGGGCUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCAAUUCAGGCAC
((((((..((((....))))..)))))).((((.((.(((((((((((.(..(((((((.....)))))))..))))))))))...)).)).)))).. ( -24.30)
>DroSec_CAF1 27908 98 - 1
UGGCUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGCGAAUUGCUUGAGAAUUCUUAUCUCACUUCAGGCAC
..((.((((...........((((((((.............(((((((.(..(((((((.....)))))))..)))))))))))))))).)))))).. ( -26.61)
>DroSim_CAF1 29757 97 - 1
UGACUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAACUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCACUACGGGCA-
..............(((...((((((((((.....((((.(....).))))((((((((.....)))))))).......))))))))))...)))..- ( -21.50)
>DroEre_CAF1 28433 98 - 1
UGGCUCUGAUUGUCUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAACUCAUUGAGCAAUUAAGUGAAUUGUUUGAGAAUUCUUAUCUCACUACAGGCAG
..........(((((.....((((((((((.....((((.(....).))))((((((((.....)))))))).......))))))))))...))))). ( -24.60)
>DroYak_CAF1 28531 98 - 1
UGGCUCUGAUUAUCUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUUGUUGAGUAAUUGAGUGAAUUGUUUAAGAAUUCUUAUCUCACUACGGGCAG
..((((...(((((((......)))))))((.......((((((((((.((((((((((.....))))))))))))))))))))......)))))).. ( -21.52)
>DroPer_CAF1 27300 79 - 1
GGGCGUUUAUUACCCUUGAUGGGAGAUAACUCAAAAAUCCG-AAAUUGAUUGAGCCAUUG--UAGAUUGCU------------UCUCACG---GGCU-
(((...(((((.(((.....))).)))))))).........-..........((((..((--.(((.....------------)))))..---))))- ( -15.80)
>consensus
UGGCUCUGAUUAUAUCUAAUGUGGGGUAAGUUUAAAAUGUGGGAAUUCAUUGAGUAAUUAAGUGAAUUGCUUGAGAAUUCUUAUCUCACUACAGGCA_
..((.(((((((....))))((((((((((.....((((........))))((((((((.....)))))))).......))))))))))..))))).. (-15.26 = -15.32 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:50 2006