Locus 3977

Sequence ID 2R_DroMel_CAF1
Location 13,120,733 – 13,120,824
Length 91
Max. P 0.842889
window6417

overview

Window 7

Location 13,120,733 – 13,120,824
Length 91
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 76.92
Mean single sequence MFE -24.96
Consensus MFE -13.34
Energy contribution -13.53
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -2.00
Structure conservation index 0.53
SVM decision value 0.76
SVM RNA-class probability 0.842889
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13120733 91 + 20766785
UGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GGGAU--AGUUAGUUAAUAACCU---AGGAUCCAAAUGUUCAA---CUGA
.((((.(((((((.....)))))))))))..((((((((((.((....)--)((((--..((((........))---)).))))...)))))))---))). ( -33.10)
>DroSec_CAF1 14815 87 + 1
AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GGGAU--AGU----CAUUAACCU---AGGCUCAAGUUGUUCAA---AUGA
.((((.(((((((.....)))))))))))..((.((((((((((...((--(...(--((.----.......))---)..))).))))))))))---.)). ( -29.90)
>DroSim_CAF1 17165 87 + 1
AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGGUUGAGCAACUAAAGA--GACAU--AGU----UAUUAACCU---AGGCUCAAGUUGUUCCA---AUGA
.((((.(((((((.....)))))))))))..((...((((((((...((--(...(--((.----.......))---)..))).))))))))..---.)). ( -28.10)
>DroEre_CAF1 14968 90 + 1
AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGAUUGAGCAACUAAAACA-CGGGAAGGGU----UAUUAACCU---ACAAUCAAAAUGUUCAA---AUGA
.((((.(((((((.....)))))))))))..((.(((((((.((......-..))..((((----.....))))---..........)))))))---.)). ( -24.20)
>DroYak_CAF1 14841 88 + 1
AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGUCGAUUGAGCAACUGAAAAA-AGGAA--UGU----UAUUAACCA---AGAAUCAAAAUGUUCAA---AUGA
.((((.(((((((.....))))))))))).(((.(((((((..(((....-.((..--...----......)).---....)))...)))))))---.))) ( -22.60)
>DroAna_CAF1 15218 90 + 1
AGGAAUUGGUGCCUUCUUGGCCCUCUUCUGACGAUUAAGGAGCUGCAAAAAAGGAU--A-U----UAUUAAGAGGAUAUAAUAAGAAU----AAAGGAUGU
.((((..((.(((.....)))))..))))...............(((.........--.-(----(((((........))))))....----......))) ( -11.85)
>consensus
AGGAAUGGGGGUCUUCUUGGCCCUCUUCUGACGAUUGAGCAACUAAAAA__GGGAU__AGU____UAUUAACCU___AGAAUCAAAAUGUUCAA___AUGA
.((((.(((((((.....)))))))))))........................................................................ (-13.34 = -13.53 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:44 2006