Locus 3975

Sequence ID 2R_DroMel_CAF1
Location 13,112,860 – 13,112,950
Length 90
Max. P 0.539355
window6415

overview

Window 5

Location 13,112,860 – 13,112,950
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 86.31
Mean single sequence MFE -20.03
Consensus MFE -13.71
Energy contribution -14.17
Covariance contribution 0.45
Combinations/Pair 1.17
Mean z-score -2.09
Structure conservation index 0.68
SVM decision value 0.01
SVM RNA-class probability 0.539355
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13112860 90 + 20766785
CCUCAAGGGAAUGUUCUUAUGGGAAUAGGACUGUUGGAUAAACGACAAAUGAAUAUGUAUAUGUACUAUAUAUCUUGUGGUGAAUCAAAC
...(((.((..((((((....))))))...)).)))(((..((.((((..((.((((((.......)))))))))))).))..))).... ( -16.60)
>DroSec_CAF1 6892 83 + 1
CCUCAAGGGAAUA-------GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGCAUAUGCACUAUAUAUCUUUUGAGGAAUCAAAC
(((((((((((((-------((.......)))))).............((((((((((....)))).)))))))))))))))........ ( -24.40)
>DroSim_CAF1 7229 83 + 1
CCUCAAGGGAAUA-------GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGUAUAUGUACUAUAUAUCUUUUGGGGAAUCAAAC
(((((((((((((-------((.......)))))).............(((((((.(((....)))))))))))))))))))........ ( -19.10)
>consensus
CCUCAAGGGAAUA_______GGAAAUAGGCCUGUUGGAUAAACGAUAAAUGUAUGUGUAUAUGUACUAUAUAUCUUUUGGGGAAUCAAAC
((((((((((.....................(((((......))))).(((((.((((....))))))))).))))))))))........ (-13.71 = -14.17 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:42 2006