Locus 3972

Sequence ID 2R_DroMel_CAF1
Location 13,103,737 – 13,103,853
Length 116
Max. P 0.526551
window6412

overview

Window 2

Location 13,103,737 – 13,103,853
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 78.33
Mean single sequence MFE -20.22
Consensus MFE -11.82
Energy contribution -12.95
Covariance contribution 1.13
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.58
SVM decision value -0.01
SVM RNA-class probability 0.526551
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13103737 116 - 20766785
CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAAAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCCAAUGUUUAAGUUUGCACAU----
.....((((...(((((..(((((....(((((.(((((((......))))))))))))....)))))....((((....)))))))))...))))...(((........)))...---- ( -21.50)
>DroSec_CAF1 7381 101 - 1
CUUCUGCUAGUAAUUUCAAAAUUACUUGAAAUAAGGUUCAGAAUAUCUUGAAUCCAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCC---------------ACAU----
.....((((...(((((((......)))))))..(((((((......))))))).........(((......((((....)))).....))))))).---------------....---- ( -17.90)
>DroSim_CAF1 3088 116 - 1
CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAUAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUUUAGCCAAUGUUUAAGUUUGCACAU----
.....(((((..(((((..(((((....(((((.((((((........)))))))))))....)))))....((((....)))))))))..)))))...(((........)))...---- ( -22.70)
>DroYak_CAF1 3030 107 - 1
CCUCUGCUAGUAAUUUUAAAAUUACUUGAAUUAAGGUGAAAGUAAACUAAAAUCUUAUUGAUAUAGUUAAAAUUACGCAAGUAAGA-------------UGUUUAAUUUCACACAUACGA
......(.(((((((....))))))).).......((((((.(((((....(((.....)))..........((((....))))..-------------.))))).))))))........ ( -18.80)
>consensus
CCUCUGCUAGUAAUUUCAAAAUUACUUGAAUUAAGGUUCAAAAUAUCUUGAAUCUAAUUAAUAUAGUUAAUAUUACGGAAGUAAGAAAUCUAUAGCC__UGUUUAAGUUUGCACAU____
.....((((((((((....))))))........((((((((......))))))))........)))).....((((....)))).................................... (-11.82 = -12.95 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:39 2006