Locus 3970

Sequence ID 2R_DroMel_CAF1
Location 13,102,487 – 13,102,586
Length 99
Max. P 0.646286
window6410

overview

Window 0

Location 13,102,487 – 13,102,586
Length 99
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.90
Mean single sequence MFE -37.50
Consensus MFE -22.68
Energy contribution -22.02
Covariance contribution -0.66
Combinations/Pair 1.26
Mean z-score -2.10
Structure conservation index 0.60
SVM decision value 0.23
SVM RNA-class probability 0.646286
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13102487 99 + 20766785
CCAUGUUGCGAUAUACGCUGCUCUGUAGUAUCUGCUGA---UAGC------CCAGGCUCAUGGCGGGCAGCUCGUUGGAGCUGCCAUUGUUUUCCGAAAGUGUAUCAU
.........((((((((((((...))))).(((((((.---.(((------....)))..)))))((((((((....))))))))..........))..))))))).. ( -34.70)
>DroPse_CAF1 5565 99 + 1
CCAUGUUACGAUACACGCUGCUCUGGAGGAUCUGCUGG---UAGC------CCACGGUCAUCGCAGGCAGUUCAUUGGAGCUGCCAUUGGACUCUGAUAAUGUAUCGU
.......((((((((.((((((..(.((...)).).))---))))------.((.((((......((((((((....))))))))....)))).))....)))))))) ( -34.90)
>DroGri_CAF1 8399 108 + 1
CCAGAUUGCGAUAAACACUGCUCUGCAGCAGCUGCUGAUGGUAGCUGAUGUCCACGGUCAUGCCAGGCAGUUCAUUGGAGCUGCCAUUUACCUCGGACAAGGUGUCGU
.......((((((....((((...))))(((((((.....))))))).(((((..((.....)).((((((((....)))))))).........)))))...)))))) ( -42.40)
>DroYak_CAF1 1773 99 + 1
CCAUGUUGCGGUACACGCUGCUCUGUAGUAUCUGCUGA---UAGC------CCAGGUUCAUGGCGGGCAGCUCGUUGGAGCUGCCAUUGUUCUCUGAAAGUGUAUCGU
.......(((((((((((((.((.((((...)))).))---))))------.((((..((.....((((((((....))))))))..))..).)))...))))))))) ( -39.60)
>DroAna_CAF1 4956 99 + 1
CCAUGUUGCGGUACACACUGCUCUGGAGGAUCUGCUGG---UAGC------CCAUGCUCAUAGGGGGCAGUUCAUUGGAGCUGCCAUUGUUCUCCGACAGGGUGUCGU
.......(((..((...(((.((.(((((((....(((---((((------((((((((.....)))))......))).)))))))..)))))))))))).))..))) ( -38.50)
>DroPer_CAF1 5546 99 + 1
CCAUGUUACGAUACACGCUGCUCUGGAGGAUCUGCUGG---UAGC------CCACGGUCAUCGCAGGCAGUUCAUUGGAGCUGCCAUUGGACUCUGAUAAUGUAUCGU
.......((((((((.((((((..(.((...)).).))---))))------.((.((((......((((((((....))))))))....)))).))....)))))))) ( -34.90)
>consensus
CCAUGUUGCGAUACACGCUGCUCUGGAGGAUCUGCUGA___UAGC______CCACGGUCAUGGCAGGCAGUUCAUUGGAGCUGCCAUUGUUCUCUGAAAAUGUAUCGU
.......(((((((...................((((....))))....................((((((((....))))))))................))))))) (-22.68 = -22.02 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:37 2006