Locus 3969

Sequence ID 2R_DroMel_CAF1
Location 13,102,196 – 13,102,288
Length 92
Max. P 0.500000
window6409

overview

Window 9

Location 13,102,196 – 13,102,288
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 82.73
Mean single sequence MFE -26.44
Consensus MFE -17.08
Energy contribution -17.97
Covariance contribution 0.89
Combinations/Pair 1.41
Mean z-score -1.71
Structure conservation index 0.65
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13102196 92 + 20766785
GCCAUUGCCAGCUAAGGCGGUAAGCAACAUCACCGGUUUUCGGGAUCGGGGAGUCAUGAUAGAUUCCUACAAUGUAAAA-CAAAUAUGUUGUA
...((((((......))))))..(((((((..((((((.....))))))((((((......))))))............-.....))))))). ( -27.30)
>DroPse_CAF1 5337 85 + 1
GCCAUUGCCAGCCAAGGCAUUGAGCAGCAUAACGGGUUUGCGGGAGCGUGGCGUCAUAAUAGACUCCUGCAAUGAAA-U-CAGGUAU------
((((.((((......)))).)).)).((.........((((((((((...))(((......))))))))))).....-.-...))..------ ( -24.57)
>DroSec_CAF1 5830 92 + 1
GCCAUUGCCAGCUAAGGCGGUAAGCAGCAUCACCGGUUUCCGGGAUCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAA-CAAAUAUGUUGCA
...((((((......))))))..(((((((..((((((.....))))))((((((......))))))............-.....))))))). ( -29.60)
>DroEre_CAF1 6329 93 + 1
GCCAUUGCCAGCUAAGGCAGUAAGUAGCAUCACCGGUUUUCGGGAGCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAAAAAAAUGUGCUGUA
...((((((......)))))).((((((.((.(((.....))))))).(((((((......)))))))..................))))... ( -25.10)
>DroYak_CAF1 1549 92 + 1
GCCAUUGCCAGCUAAGGCAGUAAGCAGCAUCACCGGUUUUCGAGAGCGGGGAGUCAUAAUAGAUUCCUAUAACGUAAAA-CAAAUAUGUUGUA
...((((((......))))))..(((((((.....(((((((..(...(((((((......))))))).)..)).))))-)....))))))). ( -27.50)
>DroPer_CAF1 5318 85 + 1
GCCAUUGCCAGCCAAGGCAUUGAGCAGCAUAACGGGUUUGCGGGAGCGUGGCGUCAUAAUAGACUCCUGCAAUGAAA-U-CAGGUAU------
((((.((((......)))).)).)).((.........((((((((((...))(((......))))))))))).....-.-...))..------ ( -24.57)
>consensus
GCCAUUGCCAGCUAAGGCAGUAAGCAGCAUCACCGGUUUUCGGGAGCGGGGAGUCAUAAUAGAUUCCUACAAUGUAAAA_CAAAUAUGUUGUA
...((((((......))))))..(((((((.........(((....)))((((((......))))))..................))))))). (-17.08 = -17.97 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:36 2006