Locus 3967

Sequence ID 2R_DroMel_CAF1
Location 13,099,028 – 13,099,148
Length 120
Max. P 0.864180
window6407

overview

Window 7

Location 13,099,028 – 13,099,148
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.67
Mean single sequence MFE -41.81
Consensus MFE -37.48
Energy contribution -37.49
Covariance contribution 0.01
Combinations/Pair 1.08
Mean z-score -2.21
Structure conservation index 0.90
SVM decision value 0.84
SVM RNA-class probability 0.864180
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13099028 120 - 20766785
GUGGAAUCACUUGAUUGCUACAACAUGUUGGAACAUGUGUUGUUGCUGGAGUCGGGCUUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC
..((((((((((((.....(((((((((......))))))))).((..((((..((((.......))))))))..))..)))))))))))).(((((.............)))))..... ( -42.62)
>DroSim_CAF1 10219 120 - 1
GUGGAAUCACUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGCUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC
..((((((((((((..((.(((((((((......))))))))).))..(((.((((((((.....))).)).))).))))))))))))))).(((((.............)))))..... ( -42.12)
>DroYak_CAF1 10520 115 - 1
AUAGAAUCGCUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGGUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUUUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUCUGCC-----
..((((((((((((..((((((((((((......))))))))).....(((((((.(.........)))))))))))..))))))))))))(((((.((.....)))))))....----- ( -40.70)
>consensus
GUGGAAUCACUUGAUUGCUACAACAUGUAGGAACAUGUGUUGUUGCUGGAGGCGGGCGUUUAAUUAGCUGCUUUGGCUCUCAAGUGAUUUUGGGCGCUCUCAAUGACGCUGCGCCGCCUC
.(((((((((((((..((((((((((((......))))))))).....(((((((.(.........)))))))))))..)))))))))))))(((((.............)))))..... (-37.48 = -37.49 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:34 2006