| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,068,191 – 13,068,307 |
| Length | 116 |
| Max. P | 0.772561 |
| Location | 13,068,191 – 13,068,307 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 96.55 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -26.83 |
| Energy contribution | -26.50 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.680238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13068191 116 + 20766785 CAAUAACGAGACCCCCAAGAAGGAGGAAUCGGAUCGUAUUGAUAAUUCAAUAGAGCCGCCACUCAGUAAAUCUGAGAAUCGAAAGCGUCGCAAGAAAUCAAAGCGCAACAAGGAAU .......((..((.((.....)).))..))((.((.((((((....)))))))).)).((.(((((.....)))))........(((((....)........)))).....))... ( -26.60) >DroSec_CAF1 6851 116 + 1 CAAUAACGAGACCCCCAAGAAGGAGGAAUCGGACCGUAUCGAUAAUUCAAUUGAGCCGCCACUCAGUAAAUCUGAGAAUCGAAAGCGGCGCAAGAAGUCGAAGCGCAACAAGGAAU ......(((..((.((.....)).))..)))...(((.(((((..(((..(((.(((((..(((((.....)))))........))))).))))))))))).)))........... ( -31.30) >DroSim_CAF1 6848 116 + 1 CAAUAACGAGACCCCCAAGAAGGAGGAAUCGGACCGUAUCGAUAAUUCAAUAGAGCCGCCACUCAGUAAAUCUGAGAAUCGAAAGCGGCGCAAGAAGUCGAAGCGCAACAAGGAAU ......(((..((.((.....)).))..)))...(((.(((((...((....))((.(((.(((((.....)))))...(....).))))).....))))).)))........... ( -29.40) >consensus CAAUAACGAGACCCCCAAGAAGGAGGAAUCGGACCGUAUCGAUAAUUCAAUAGAGCCGCCACUCAGUAAAUCUGAGAAUCGAAAGCGGCGCAAGAAGUCGAAGCGCAACAAGGAAU ......(((..((.((.....)).))..)))...(((.(((((...((....))((.(((.(((((.....)))))...(....).))))).....))))).)))........... (-26.83 = -26.50 + -0.33)
| Location | 13,068,191 – 13,068,307 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 96.55 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -30.81 |
| Energy contribution | -30.70 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13068191 116 - 20766785 AUUCCUUGUUGCGCUUUGAUUUCUUGCGACGCUUUCGAUUCUCAGAUUUACUGAGUGGCGGCUCUAUUGAAUUAUCAAUACGAUCCGAUUCCUCCUUCUUGGGGGUCUCGUUAUUG .......((((((...........))))))(((.......(((((.....))))).)))((.((((((((....)))))).)).))((..(((((.....)))))..))....... ( -29.70) >DroSec_CAF1 6851 116 - 1 AUUCCUUGUUGCGCUUCGACUUCUUGCGCCGCUUUCGAUUCUCAGAUUUACUGAGUGGCGGCUCAAUUGAAUUAUCGAUACGGUCCGAUUCCUCCUUCUUGGGGGUCUCGUUAUUG ...........((..((((.((((((.((((((.......(((((.....))))).)))))).)))..)))...))))..))...(((..(((((.....)))))..)))...... ( -34.90) >DroSim_CAF1 6848 116 - 1 AUUCCUUGUUGCGCUUCGACUUCUUGCGCCGCUUUCGAUUCUCAGAUUUACUGAGUGGCGGCUCUAUUGAAUUAUCGAUACGGUCCGAUUCCUCCUUCUUGGGGGUCUCGUUAUUG ...........((..((((.(((..(.((((((.......(((((.....))))).)))))).)....)))...))))..))...(((..(((((.....)))))..)))...... ( -33.60) >consensus AUUCCUUGUUGCGCUUCGACUUCUUGCGCCGCUUUCGAUUCUCAGAUUUACUGAGUGGCGGCUCUAUUGAAUUAUCGAUACGGUCCGAUUCCUCCUUCUUGGGGGUCUCGUUAUUG ...........((..((((.(((..(.((((((.......(((((.....))))).)))))).)....)))...))))..))...(((..(((((.....)))))..)))...... (-30.81 = -30.70 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:24 2006