Locus 3957

Sequence ID 2R_DroMel_CAF1
Location 13,050,705 – 13,050,819
Length 114
Max. P 0.643237
window6390

overview

Window 0

Location 13,050,705 – 13,050,819
Length 114
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 89.07
Mean single sequence MFE -26.80
Consensus MFE -19.21
Energy contribution -19.61
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.72
SVM decision value 0.23
SVM RNA-class probability 0.643237
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13050705 114 + 20766785
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCCAGCCGAUGAUUACUCGAUGCAAUCGGUUUUGGCUUAUCGGCAA-CAAAUCGAUUGAUGCCUAAUUCUAAAAAAUCGGU
....(((((((........)))))))..(((....)))(((((((((((..((...((((((((((..(((....)))..-.)))))))))).))..))))).......)))))) ( -28.01)
>DroSec_CAF1 21127 114 + 1
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGUUUACUCAAUGCAAUCGGUUUUGGCUAAUCGGAAA-CAAAUCGAUUUCCGCCUAAUUAUGAAAAAUCGGU
....(((((((........)))))))(((....((.((((((((((.........)).)))))))).))...)))(....-)..((((((((...(........)..)))))))) ( -25.60)
>DroSim_CAF1 20828 114 + 1
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUACUCGAUGCAAUCGGUUUUGGCUAAUCGGAAA-CAAAUCGAUUGCCGCCUAAUUCUGAAAAAUCGGU
....(((((((........)))))))..(((...))).(((((((((((..((..(((((((((((.((....))(....-))))))))))))))..))))).......)))))) ( -26.71)
>DroEre_CAF1 22829 115 + 1
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACUCCAGCCGAUGAUUAUUUAAUGCUAUCGUUUUUGGUUAAUCGGAAAAAAAAUCGAUUGCUGUAGACUUCUAAAAAAUCGGU
....(((((((........)))))))..(((....))).((((((((((...((((....))))..))))).))))).......(((((((....(((....)))...))))))) ( -24.60)
>DroYak_CAF1 23487 114 + 1
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUAGUUAAUGCAAUCGUUUUUGGCUAAUCGGAAA-CAAAUCGAUUGCUCUUGACUUUUGAAAAAUCGGU
....(((((((........)))))))..(((...))).((((((....((((((.(((((((..((((.((....))...-)))).)))))))..))))))........)))))) ( -29.10)
>consensus
AAAAUCUUACAAAUUUUCAUGUGAGAGAUGGAACCCAAACCGAUGAUUACUCAAUGCAAUCGGUUUUGGCUAAUCGGAAA_CAAAUCGAUUGCUGCCUAAUUCUGAAAAAUCGGU
....(((((((........)))))))(((....((.((((((((..............)))))))).))...))).........(((((((.................))))))) (-19.21 = -19.61 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:17 2006