Locus 3953

Sequence ID 2R_DroMel_CAF1
Location 13,046,536 – 13,046,627
Length 91
Max. P 0.703302
window6382

overview

Window 2

Location 13,046,536 – 13,046,627
Length 91
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 81.71
Mean single sequence MFE -19.42
Consensus MFE -16.14
Energy contribution -16.33
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.48
Structure conservation index 0.83
SVM decision value 0.36
SVM RNA-class probability 0.703302
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13046536 91 + 20766785
AUUAAAUGGACAUUAU----CAUAAUAACAUUUCGUG---AGCUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
.......(((...(((----((...........(...---.).......(((..(((((((......)))))))..))))))))..)))......... ( -21.90)
>DroVir_CAF1 22631 93 + 1
GUUAGCCAAAU-----GAUUAUCAAAACAAACUCGUGCGCAACUUACCUCCGUAUGGCCGCCACGACACGGUCACCCGACGAUAUUUCCUUCGCAUAG
....((.((..-----((.((((.........(((((.((..(.(((....))).)...)))))))..(((....)))..)))).))..)).)).... ( -16.40)
>DroSec_CAF1 16987 91 + 1
AUUAAAUGGACAUUAU----CUAAAUAUCAAUUAGUG---ACUUUACCUUCGUAUGGCCGCCAUUACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
.......(((......----...(((((((....(((---....)))..(((..(((((((......)))))))..)))))))))))))......... ( -20.10)
>DroSim_CAF1 16715 91 + 1
AUUAAAUGGAUAUUAU----CUCAAUAUCAAUUAGUG---ACUUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
........((((((..----...)))))).....(((---(........(((..(((((((......)))))))..)))...........)))).... ( -20.91)
>DroEre_CAF1 18747 90 + 1
AUUAAAUGAAUAGUUU-----UUAAUAACAAGCAGUG---ACCCUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
............(((.-----.....))).....(((---(........(((..(((((((......)))))))..)))...........)))).... ( -18.11)
>DroYak_CAF1 19300 91 + 1
AUUAAAUGGACAUUAU----UUGAAUAUCAAUCAGCG---CCCUUACCUUCGUAUGGCCGCCAUUACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
.......(((((....----.))(((((((.......---.........(((..(((((((......)))))))..)))))))))))))......... ( -19.09)
>consensus
AUUAAAUGGACAUUAU____CUCAAUAUCAAUUAGUG___ACCUUACCUUCGUAUGGCCGCCAUGACGCGGUCACCCGAUGAUAUUUCCUUCGCAUAC
..................................(((............(((..(((((((......)))))))..)))............))).... (-16.14 = -16.33 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:10 2006