Locus 395

Sequence ID 2R_DroMel_CAF1
Location 2,372,845 – 2,372,949
Length 104
Max. P 0.600165
window776

overview

Window 6

Location 2,372,845 – 2,372,949
Length 104
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 80.95
Mean single sequence MFE -16.08
Consensus MFE -13.34
Energy contribution -13.46
Covariance contribution 0.11
Combinations/Pair 1.09
Mean z-score -1.28
Structure conservation index 0.83
SVM decision value 0.13
SVM RNA-class probability 0.600165
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2372845 104 - 20766785
UUUAAAGACCCAAUGCACAGUUUCCUCCAACCCUUCUCCAACUGUUCAUAAAAAAAUUAUAUGCAAAGGUGAAGGGUUCUUCCCUAAAU-----------AAAUGU---UCUAUUCUA-
.....(((......(((..((((.....((((((((.((...(((..((((.....))))..)))..)).)))))))).......))))-----------...)))---.....))).- ( -16.60)
>DroSec_CAF1 22212 119 - 1
UUUAAAGACCAAUGACAUAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU
...(((((.........((((((.....(((((((((((............................))))))))))).......)))))).....(((.....))).......))))) ( -15.89)
>DroSim_CAF1 22342 119 - 1
UUUAAAGACCAAUGACACAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU
...(((((.....((((((((((.............................)))))).))))...(((((((((......))))...........(((.....))))))))..))))) ( -15.75)
>consensus
UUUAAAGACCAAUGACACAGUUUCUUCCAAUCCUUCUCCAACUUCUCAUAAAAAACUGCUGUCCUAAGGAGAAGGGUUCUACCUUAAAUUAAACUUGACAAAAUGUUCUUCUAUUCUUU
............................(((((((((((............................)))))))))))......................................... (-13.34 = -13.46 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:28 2006