Locus 3944

Sequence ID 2R_DroMel_CAF1
Location 13,020,694 – 13,020,814
Length 120
Max. P 0.625028
window6370

overview

Window 0

Location 13,020,694 – 13,020,814
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.67
Mean single sequence MFE -42.89
Consensus MFE -37.62
Energy contribution -37.02
Covariance contribution -0.61
Combinations/Pair 1.22
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.19
SVM RNA-class probability 0.625028
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 13020694 120 + 20766785
CGAUUUCUGGACCUCCGGCAAUCGCCUGGGCACGGGCAUGUUCCUAUGGAUGAGCACUGGUCUGCCGUUUAACGCCACUUUUGAUUUCUUCGAAAACUCGGCGGACGCCAUCCAGGCCGG
.((((.((((....)))).))))(((((((....(((.(((((........)))))...((((((((...........((((((.....))))))...))))))))))).)))))))... ( -45.14)
>DroVir_CAF1 19312 120 + 1
UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCCACAUUUGACUUCUUCGAGAACUCGGCCGAUGCCAUCCAGGCCGG
.(((((((((....)))))))))((((((((((((.(..((((...(((.(((((...((....)))))))...)))...((((.....))))))))..).))).)))...))))))... ( -41.70)
>DroGri_CAF1 4715 120 + 1
UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCGACCUUUGAUUUCUUCGAGAAUUCGGCCGAUGCCAUCCAGGCUGG
.(((((((((....)))))))))(((((....))))).....((..((((((.(((.(((.((..(((.....)))......((.(((.....))).))))))).)))))))))....)) ( -42.40)
>DroWil_CAF1 2375 120 + 1
UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGUUUACCGUUCAAUGCCACCUUUGAUUUCUUUGAAAACUCGGCCGAUGCCAUUCAGGCUGG
.(((((((((....)))))))))((((((((((((((((......((((.(((((....)))))))))...))))).((...(.((((...)))).)..)).)).))))...)))))... ( -39.60)
>DroMoj_CAF1 4139 120 + 1
CGAUUUCUGGACCUCCGGAAAUCGUUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCAACAUUCGAUUUCUUCGAGAAUUCGGCCGAUGCCAUCCAAGCGGG
.(((((((((....)))))))))(((((((....(((((...((...(((((.(((..((((....))))..)))..)))))((.(((.....))).))))...))))).)))))))... ( -42.40)
>DroAna_CAF1 195 120 + 1
UGAUUUCUGGACAUCCGGCAAUCGCCUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGUCUGCCGUUCAAUGCCACCUUCGAUUUCUUCGAGAACUCGGCGGACGCCAUUCAGGCCGG
.((((.((((....)))).))))((((((((.(((((.(((((....))))).)).)))(((((((((((..........((((.....))))))))..))))))))))...)))))... ( -46.10)
>consensus
UGAUUUCUGGACAUCCGGAAAUCGCUUGGGCACGGGCAUGUUCCUAUGGAUGAGCACCGGACUACCGUUCAAUGCCACCUUUGAUUUCUUCGAGAACUCGGCCGAUGCCAUCCAGGCCGG
.(((((((((....)))))))))(((((((....(((((((((........))))..(((....)))....)))))...(((((.....))))).....(((....))).)))))))... (-37.62 = -37.02 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:58 2006