| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 13,006,904 – 13,007,008 |
| Length | 104 |
| Max. P | 0.948678 |
| Location | 13,006,904 – 13,007,008 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.63 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -14.35 |
| Energy contribution | -15.02 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.948678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 13006904 104 + 20766785 AAAGGAAUAAGCUGGUCAUUA-AUCAACUACGU-------UACUUGUAUAUCCAGUUUGAUGCCGAUGGCAACCUCAUCCAGUGGGAUGGAUCUCCCAUCCUGCUCAAUGCU ..(((..((((((((....((-(..(((...))-------)..))).....)))))))).((((...)))).)))(((..((..((((((.....))))))..))..))).. ( -29.70) >DroSec_CAF1 17574 104 + 1 AAAGGAAUAAACUGGUCACUA-AUCAACUACGU-------UACUUGUAUCUCCAGUUUGAUGCCGAUGGCAACCUCAUCAAGUGGGACGGAUCUCCCAUCCUGCUCAAUGCU ..(((..((((((((......-......((((.-------....))))...)))))))).((((...)))).)))(((..((..(((.((.....)).)))..))..))).. ( -25.66) >DroSim_CAF1 16962 104 + 1 AAAGGAAUAAACUGGUCAUUA-AUCAACUACGU-------CACUUGUAUCACCAGUUUGAUGCCGAUGGCAACCUCAUCAAGUGGGACGGAUCUCCCAUCCUGCUCAAUGCU ..(((..(((((((((.((..-..(((......-------...))).)).))))))))).((((...)))).)))(((..((..(((.((.....)).)))..))..))).. ( -27.00) >DroEre_CAF1 16722 89 + 1 ----G---------------AUAUGAU--AUGUAUC--CUAACUUGUAUCUCCAGUUCGAUGCCAAUGGCAACCUCCUCAAGUGGGAUGGGUCUCCCAUCCUGCUCAAUGCU ----(---------------((((...--..)))))--.......((((...........((((...)))).........((..(((((((...)))))))..))..)))). ( -23.10) >DroYak_CAF1 17312 102 + 1 AAAAGAU----------AUUAUAUCAUAUAUGUAUGUAUAUACUUGUUACUUCAGUUUGAUGCCGAUGGCAACCUCAUCGAGUGGGAUGGCUCGCCUAUCCUGCUCAAUGCU ....(((----------(.(((((((((....)))).)))))..)))).............((.(((((.....)))))(((..((((((....)).))))..)))...)). ( -24.90) >DroAna_CAF1 24474 84 + 1 AAA-----------GUCUUUA-GUAAAAU----------------UUACUUUCAGUUUGACGCUGAAGGCAACCUGAUUGAAUGGGAUGGUUCUCCUAUUCUUCUAAAUGCC ...-----------(((((((-((.((((----------------(.......)))))...))))))))).....((..((((((((......)))))))).))........ ( -20.50) >consensus AAAGGAA_______GUCAUUA_AUCAACUACGU_______UACUUGUAUCUCCAGUUUGAUGCCGAUGGCAACCUCAUCAAGUGGGAUGGAUCUCCCAUCCUGCUCAAUGCU ............................................................((((...))))....(((..((((((((((.....))))))))))..))).. (-14.35 = -15.02 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:50 2006