| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,980,034 – 12,980,125 |
| Length | 91 |
| Max. P | 0.951133 |
| Location | 12,980,034 – 12,980,125 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 81.57 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -17.27 |
| Energy contribution | -18.24 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.69 |
| Structure conservation index | 0.55 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12980034 91 - 20766785 A-GUUUUGAGGGACUGGAGGGUUUUGGGGCUUUUGAAGGAGUGUUGAGUU--UCAGCAUGCUUUCAUCGAACUCUAGGUUCUCUUUGCUC---UGGU .-....(.((((...((((..(((.(((.....((((((.((((((....--.)))))).)))))).....))).)))..))))...)))---).). ( -29.60) >DroSec_CAF1 21645 89 - 1 A-AUU-UGGGGGACUGGAGGGUUGGGGGGCUUUUGAAGGAGUGUUGAGUU--UCAGCAUGCUUUCAUCGAACUCUAG-UUCUCUUUGCUC---UGGU .-..(-..(((.(..((((..((((((..(...((((((.((((((....--.)))))).))))))..)..))))))-..)))).).)))---..). ( -34.40) >DroSim_CAF1 23479 89 - 1 A-AUU-UGGGGGACUGGAGGAUUGGGGGGCUUUUGAAGGAGUGUUGAGUU--UCAGCAUGCUUUCAUCGAACUCUAG-UUCUCUUUGCUC---UGGU .-..(-..(((.(..((((((((((((..(...((((((.((((((....--.)))))).))))))..)..))))))-)))))).).)))---..). ( -35.50) >DroEre_CAF1 20695 84 - 1 A-GU--UGGGGGACUGGAGGGUUCGGGA----UUAGGGGAGUGUUGAGUU--UCAGCAUGUUAUCAUCGAACUAUAG-UUCUCUUUGCUC---UGGU (-((--.(((((((((...(((((((((----(.......((((((....--.))))))...))).))))))).)))-))))))..))).---.... ( -27.80) >DroYak_CAF1 27959 84 - 1 A-GU--UGGGGGACUGGAGGGUUCGGGA----UUGAAGGAGUGUUGAGUU--UCAGCAUGUUUUCAUCGAACUCUAG-UUCUCUUUGCUC---UGGU (-((--.((((((((((((...((((..----.((((((.((((((....--.)))))).)))))))))).))))))-))))))..))).---.... ( -31.70) >DroAna_CAF1 12550 83 - 1 UUGUU-UGGAGGAGUUGAGGACU------------GAGGAGUGUUGAGUUUUUCAGCAUGAUUUCAUCGAUCUCUAG-UUCUCUACGCUCGUUCAGU ....(-((((.((((.(((((((------------((((.((((((((...))))))))(((...)))..)))).))-)))))...)))).))))). ( -28.00) >consensus A_GUU_UGGGGGACUGGAGGGUUCGGGG____UUGAAGGAGUGUUGAGUU__UCAGCAUGCUUUCAUCGAACUCUAG_UUCUCUUUGCUC___UGGU .......((((((((((((..............((((((.(((((((.....))))))).)))))).....)))))).))))))............. (-17.27 = -18.24 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:42 2006