Locus 3933

Sequence ID 2R_DroMel_CAF1
Location 12,974,827 – 12,974,917
Length 90
Max. P 0.589445
window6351

overview

Window 1

Location 12,974,827 – 12,974,917
Length 90
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 93.01
Mean single sequence MFE -20.70
Consensus MFE -18.36
Energy contribution -19.24
Covariance contribution 0.88
Combinations/Pair 1.10
Mean z-score -1.18
Structure conservation index 0.89
SVM decision value 0.11
SVM RNA-class probability 0.589445
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12974827 90 - 20766785
UAU----GUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCAGGCUUUGAUCGUUUGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU
...----(((((.......(((((((.....)))))))..(((((((((.......))))))..)))....))))).................. ( -22.80)
>DroSec_CAF1 16507 90 - 1
UAU----GUGGAUAAGACUUUCUACGAUUUGCGUACAACAGCUGCUGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU
(((----(..(((.((.....))...)))..))))...(((((((((((...........)).))))...................)))))... ( -16.50)
>DroSim_CAF1 18315 90 - 1
UAU----GUGGAUAAGACUUUCUACGAUUUGCGUACAACAGCUGCAGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU
...----(((((.((..((....((((((.((.(.((.....)).).))...))))))......))..)).))))).................. ( -15.60)
>DroEre_CAF1 15492 90 - 1
UAU----GUGGAAACGACUUUCUACGAUUUGCGUAGAACAGCUGCGAUCUUUGAUCGUUCGCACAGCGUUUUCCACUCAUUUUCCAAGCUGAUU
...----(((((((((.(((((((((.....)))))))..((.((((((...))))))..))..)))).))))))).................. ( -25.90)
>DroYak_CAF1 22854 94 - 1
CAUCAUUAUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCGGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU
.((((.(.((((.......(((((((.....)))))))..(((((((((.......))))))..)))...............)))).).)))). ( -22.70)
>consensus
UAU____GUGGAUACGACUUUCUACGAUUUGCGUAGAACAGCUGCAGGCUUUGAUCGUUCGCACAGCAUUUUCCACUCAUUUUCCAAGCUGAUU
.......(((((.......(((((((.....)))))))..(((((((((.......))))))..)))....))))).................. (-18.36 = -19.24 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006