Locus 3930

Sequence ID 2R_DroMel_CAF1
Location 12,954,245 – 12,954,335
Length 90
Max. P 0.684797
window6347

overview

Window 7

Location 12,954,245 – 12,954,335
Length 90
Sequences 3
Columns 92
Reading direction reverse
Mean pairwise identity 66.79
Mean single sequence MFE -32.93
Consensus MFE -13.81
Energy contribution -16.93
Covariance contribution 3.12
Combinations/Pair 1.20
Mean z-score -2.35
Structure conservation index 0.42
SVM decision value 0.31
SVM RNA-class probability 0.684797
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12954245 90 - 20766785
GGGAAGAUGCAUCUCCGCAUACCCGCAUCUGUAGCAG-UGCGAGCAGCUGCGUUUCCAACAUUUAUC-GGGGAUGCAGCAGCAGCUUUUCGG
(..(((((((......))))...((((.(((...)))-)))).((.(((((((..((..........-))..))))))).))..)))..).. ( -33.80)
>DroYak_CAF1 6119 89 - 1
GGGAAG-UGCAUCUCCGCAUCCCCGCAGCUGUAGUAA-UGCGAGCAGCUGCGCUUCCAGCUCUUAUC-GGGGAUGCAGCAGCAGCUUUCCGG
((((((-(((..((..((((((((((((((((.(...-..)..))))))))((.....)).......-))))))))))..))).)))))).. ( -43.50)
>DroAna_CAF1 5835 71 - 1
GGGAUGAUGCA-------GUAACCGUA---GUAACAGACGGAAGCUGCUGG-----AAUCACUUAUCCGGAGAUGCAGUAGC------CCGG
(((....((((-------....((((.---.......))))...((.((((-----(........))))))).))))....)------)).. ( -21.50)
>consensus
GGGAAGAUGCAUCUCCGCAUACCCGCA_CUGUAGCAG_UGCGAGCAGCUGCG_UUCCAACACUUAUC_GGGGAUGCAGCAGCAGCUUUCCGG
((((((.(((.....((((.....((.......))...))))....((((((.((((...........)))).)))))).))).)))))).. (-13.81 = -16.93 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:37 2006