| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,953,460 – 12,953,563 |
| Length | 103 |
| Max. P | 0.630981 |
| Location | 12,953,460 – 12,953,563 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 85.40 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -14.32 |
| Energy contribution | -16.07 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12953460 103 - 20766785 UA--AUAUUUUCGGAUGUAAUAGAACUUCAUAUCGUUU-CUGCUAGCCCAUGCUGGCAUUGCCAAACUGAAUCGAUUAUUCAGAUGACCUUCUUUUCGCAUCACAG ..--.........(((((((.((((..((((...((..-.(((((((....)))))))..))....((((((.....))))))))))..)))).)).))))).... ( -25.70) >DroSec_CAF1 5253 104 - 1 UA--AUAUUUUCGGUUGUAAUAGAACUUCAUCUCGUUUGCUGCUAGCCCAUGCUGGCAUUGCCAAACUAAAUCGAUUAUUCAGAUGACCUUCUUUUCGCAUCACAG ..--........(((.((((.((((..((((((.(((((((((((((....)))))))..).)))))......((....))))))))..)))).)).))))).... ( -24.00) >DroEre_CAF1 5480 106 - 1 UAUAUGAUGUCAUAUAGACAUAGAAUUCCAUUUCAUUUUCUGCUAGCCCAUGCUGGCAUUGCCGAACUGAAUCGAUUAUUCCGAUGACCUUCUUUUCACAUCACAG ....((((((.....(((..........((.(((......(((((((....))))))).....))).)).((((.......)))).....)))....))))))... ( -19.30) >DroYak_CAF1 5313 104 - 1 UA--UUAUAUUGCGAUGUCAUAGAACUUUAUUUCCUUUUCUGCUAGCCCAUGUUGGCAUUGCCAAACUGAAUCGAUUAUUCCGAUGACCUUCUUUUUACAUCACAG ..--......((.(((((...((((...............(((((((....)))))))............((((.......))))....))))....))))).)). ( -17.40) >consensus UA__AUAUUUUCGGAUGUAAUAGAACUUCAUUUCGUUUUCUGCUAGCCCAUGCUGGCAUUGCCAAACUGAAUCGAUUAUUCAGAUGACCUUCUUUUCACAUCACAG .............(((((...((((..((((.........(((((((....)))))))........((((((.....))))))))))..))))....))))).... (-14.32 = -16.07 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:36 2006