| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,919,378 – 12,919,468 |
| Length | 90 |
| Max. P | 0.548732 |
| Location | 12,919,378 – 12,919,468 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 78.17 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -21.91 |
| Energy contribution | -21.97 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12919378 90 - 20766785 UACCAUUUCCAUUGG---UGUUAUAAACACUGCCAUUGUUGUUGAUGCCAGCCUUAGUAGCGGACGGCGGUGGCGGUGUGCUCAUCAAAGUGU ...........((((---((......(((((((((((((((((..(((........)))...)))))))))))))))))...))))))..... ( -32.10) >DroPse_CAF1 39578 90 - 1 UG---UUGCCAUUGGAACUGCUGUACACGUUGCCGUUGCUGUUCAUGGAGGCCACCGCGGCCGAUGGUGGCGGCGGCGUGCUCAUCAGGGUGU ..---............(((.((..(((((((((((..(((((......((((.....)))))))))..)))))))))))..)).)))..... ( -38.90) >DroEre_CAF1 45462 90 - 1 UGCCAUUUCCAUUGG---UGUUAUAAACACUGCCAUUGUUAUUGAUGCCAGCCUUGGUAGCGGAGGGCGGUGGGGGUGUGCUCAUCAGGGUGU .(((((..(((((((---(((.....)))))(((.(((((((..(.(....).)..)))))))..))))))))..))).)).(((....))). ( -30.60) >DroYak_CAF1 45200 90 - 1 UGCCAUUUCCAUUGG---UGUUAUAAACACUGCCAUUGUUAUUGAUGCCAGCCUUGGUAGCGGAGGGCGGCGGUGGUGUGCUGAUCAGAGUGU ...(((((..((..(---..(......((((((((((......)))(((..((........))..))))))))))..)..)..))..))))). ( -27.20) >DroAna_CAF1 42778 90 - 1 UGCCAUUGCCGUUGG---UGUUGUAGACACUUCCGUUGUUGUUCAAUCCGGCCAUGGUGGCAGAUGGCGGCGGCGGUGUGCUCAUCAGGGUGU .......(((.((((---((....((.(((..((((((((((...(((..(((.....))).))).)))))))))).)))))))))))))).. ( -31.70) >DroPer_CAF1 28074 90 - 1 UG---UUGCCAUUGGAACUGCUGUACACAUUGCCGUUGCUGUUCAUGGAGGCCACCGCGGCCGAUGGUGGCGGCGGCGUGCUCAUCAGGGUGU ..---............(((.((..(((.(((((((..(((((......((((.....)))))))))..))))))).)))..)).)))..... ( -32.90) >consensus UGCCAUUGCCAUUGG___UGUUAUAAACACUGCCAUUGUUGUUCAUGCCAGCCAUGGUAGCGGAUGGCGGCGGCGGUGUGCUCAUCAGGGUGU ..........................(((((((((((((((((..(((........)))...)))))))))))))))))((((....)))).. (-21.91 = -21.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:24 2006