Locus 3919

Sequence ID 2R_DroMel_CAF1
Location 12,912,212 – 12,912,304
Length 92
Max. P 0.544313
window6330

overview

Window 0

Location 12,912,212 – 12,912,304
Length 92
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 88.29
Mean single sequence MFE -29.96
Consensus MFE -23.75
Energy contribution -24.50
Covariance contribution 0.75
Combinations/Pair 1.14
Mean z-score -2.11
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.544313
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12912212 92 + 20766785
UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG
................((((((((((..................))))))(((((((((((((.....))))))..)--)))))).)))).--... ( -33.77)
>DroSec_CAF1 35568 92 + 1
UAUGUGCCUUAUUAAAGGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG
..(((..(((....)))(((((((((..................))))))(((((((((((((.....))))))..)--)))))).))).)--)). ( -33.87)
>DroSim_CAF1 23469 92 + 1
UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCCGA--CAG
................((((((((((..................))))))(((((((((((((.....))))))..)--)))))).)))).--... ( -33.77)
>DroEre_CAF1 38440 92 + 1
UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCAGUCGGAGUUUGGCUCCGAGUC--UGGGAUCUCUGA--CAG
..(((...............((((((..................))))))(((((((((((((.....))))))..)--)))))).....)--)). ( -32.07)
>DroYak_CAF1 37871 94 + 1
UAUGUGCCUUAUUAAAUGGAUGGGGCAAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGACUUUGGCUUCGAGUCUCUGGGAUCUCUGA--CUG
.................(((((((((..................))))))(((((((..((((((.......))))))))))))).)))..--... ( -25.37)
>DroAna_CAF1 35975 81 + 1
UAUAUGCUUUAUUA-AUGGAUGGGGCAUACUAACGAAAACGAAAGCCCCACUCCCAGUCGGAG------------UC--UGGGAUCUCUCACACAA
..(((((((((((.-...)))))))))))...........((...(((.(((((.....))))------------).--.)))...))........ ( -20.90)
>consensus
UAUGUGCCUUAUUAAAUGGAUGGGGCGAACAAACGAAAACGAAAGCCCCAAUCCCGGUCGGAGUUUGGCUCCGAGUC__UGGGAUCUCCGA__CAG
.................(((((((((..................))))))((((((.((((((.....)))))).....)))))).)))....... (-23.75 = -24.50 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:20 2006