Locus 3913

Sequence ID 2R_DroMel_CAF1
Location 12,895,389 – 12,895,491
Length 102
Max. P 0.957846
window6318

overview

Window 8

Location 12,895,389 – 12,895,491
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 83.66
Mean single sequence MFE -19.09
Consensus MFE -15.58
Energy contribution -15.78
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.82
SVM decision value 1.48
SVM RNA-class probability 0.957846
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12895389 102 + 20766785
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCACCGCCUCACUGCCACAGUACACCACCCCACUUGCCACGCCCACG
......((.(((((((...........((((.(((......)))....(((((.............))))).)))).............))))))).))... ( -23.67)
>DroSec_CAF1 18599 78 + 1
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCA------------------------CCCCACUUGCCACGCCCCGG
.....(((.(((((((..((.........))...((((((.......)))))).....------------------------.......)))))))..))). ( -17.90)
>DroSim_CAF1 6086 78 + 1
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCA------------------------CCCCACUUGCCACGCCCCGG
.....(((.(((((((..((.........))...((((((.......)))))).....------------------------.......)))))))..))). ( -17.90)
>DroEre_CAF1 18411 88 + 1
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCGCCGCC-------------ACACCACCCCAC-AGCCACGCCCCCG
......((.((((((..............((((((......))).)))(((......)))...-------------............-.)))))))).... ( -18.80)
>DroYak_CAF1 19892 82 + 1
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAUACCCACC-------------------CGCCCCCAC-UGCCACGCCCCCG
......((.(((((((.............((((((......))).)))(((.........-------------------.))).....-))))))))).... ( -17.20)
>consensus
UUACACGGUCGUGGCAUACAAAUUAACACUGAAAUUGCUUUAUUAUCAGGCAGACCCACC___________________C__CCCCACUUGCCACGCCCCCG
......((.((((((...((.........))...((((((.......)))))).....................................)))))).))... (-15.58 = -15.78 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:09 2006