Locus 3906

Sequence ID 2R_DroMel_CAF1
Location 12,877,908 – 12,878,003
Length 95
Max. P 0.962105
window6305

overview

Window 5

Location 12,877,908 – 12,878,003
Length 95
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 72.09
Mean single sequence MFE -44.36
Consensus MFE -19.38
Energy contribution -21.16
Covariance contribution 1.78
Combinations/Pair 1.24
Mean z-score -2.12
Structure conservation index 0.44
SVM decision value 1.54
SVM RNA-class probability 0.962105
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12877908 95 - 20766785
CAUGGCAUAGUUGAUGCGCUGCUGAGUCUGGGCCUGAACUUGGGCCUGUGCCUGGGCCUGGGCCUGAA------CCUGAGCUUGGGCC------UGGGCUUGAGCCU
....((((.....))))...(((.((...((((((......))))))..(((..((((..((((....------...).)))..))))------..))))).))).. ( -42.80)
>DroPse_CAF1 1067 74 - 1
CAUGGCAUAGUUGAUGCGCUGCAUACU---------------GGCCUGUGCCUGGGCCUGGGCCUGA------------GCCUGGGCC------UGGGCCUGAGCCU
....((((.....))))..........---------------((((.(.(((..((((..(((....------------)))..))))------..)))).).))). ( -37.00)
>DroSec_CAF1 1046 101 - 1
CAUGGCAUAGUUGAGGCGCUGCUGAGUCUGAGCCUGAGCUUGGGCCUGUGCUUGGGCCUGAACCUGAGCUUGGGCCUGGGCUUGAGCC------UGGGCUUGUGCCU
...(((((((((.(((((((.(.......))))..(((((..((((((.(((..((......))..))).))))))..)))))..)))------).))).)))))). ( -53.00)
>DroEre_CAF1 1106 101 - 1
CAUGGCAUAGUUGAUGCGCUGCUGAGCCUGAGCCUGAGCCUGAGCUUGGGCCUGCGCCUGCGCCUGGGCCUGAACCUGAGCUUGAGCC------UGGGCCUGGGCCU
...((((..((....))..))))..((((..((((..((..(((((((((((((((....)))..))))))......))))))..)).------.))))..)))).. ( -43.10)
>DroYak_CAF1 1106 101 - 1
AAUGGCAUAGUUGAUGCGCUGCUGAGCCAGAGCUUGCGCCUGAGCCUGGGCCUGAACCUGAACCUGUGCCUGA------GCUUGGGCCUGAGCUUGGGCUUGGGCCU
...(((.((((......))))(..((((.(((((((.(((..(((..(((((.............).))))..------)))..))).))))))).))))..)))). ( -45.92)
>consensus
CAUGGCAUAGUUGAUGCGCUGCUGAGUCUGAGCCUGAGCCUGGGCCUGUGCCUGGGCCUGAGCCUGAGC_UG__CCUG_GCUUGGGCC______UGGGCUUGAGCCU
...(((.(((((.(.((((.(((.((.((.......)).)).)))..)))).).)).))).)))...............(((((((((........))))))))).. (-19.38 = -21.16 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:56 2006