Locus 3905

Sequence ID 2R_DroMel_CAF1
Location 12,877,606 – 12,877,698
Length 92
Max. P 0.774721
window6304

overview

Window 4

Location 12,877,606 – 12,877,698
Length 92
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 77.82
Mean single sequence MFE -25.48
Consensus MFE -19.38
Energy contribution -19.25
Covariance contribution -0.13
Combinations/Pair 1.36
Mean z-score -1.18
Structure conservation index 0.76
SVM decision value 0.54
SVM RNA-class probability 0.774721
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12877606 92 - 20766785
-GCUGACCA---UUGUUAAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCAUUGGGCAGGGGGAGAAGACUAUCGCCUU-----GG
-..((((.(---((.....))).))))..((((...(((((....)))))..))))((((((....))))))((((.((........)).))))-----.. ( -25.40)
>DroSec_CAF1 747 92 - 1
-GCUGACCA---UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUGUCGCCCAGGCCAUUGGGCAAGGGCAGAAGACUAUCGCCUU-----GU
-(((((...---....)))(((.(((...((((...(((((....)))))..))))((((..(((....)))..))))....))).)))))...-----.. ( -26.30)
>DroEre_CAF1 813 92 - 1
-GCUGGCCA---UUGUUCAGAUUGUUGUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCGUUGGGCAGGGGUAGAAGACUGUCGCCUU-----GG
-...(((((---.(.(((...........((((...(((((....)))))..))))((((..(((....)))..)))).))).).))..)))..-----.. ( -27.60)
>DroWil_CAF1 813 90 - 1
GAUUGAUCAUGCUUGUUCAAAUUAUUAUUGAUAUAGGAUAAAUAGUUAUUAUUGUC---AUUGCCAUUGGGCAAAGGUAAAAGGCUAUUAGUA--------
.((((((...((((..((..........(((((...(((((....)))))..))))---)(((((....))))).))....)))).)))))).-------- ( -16.30)
>DroYak_CAF1 807 92 - 1
-UCUGACCA---UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCUGGCCAUUGGGCAGGGGCAGAAGACUAUCGCCUU-----GG
-.....(((---..((...(((.(((...((((...(((((....)))))..))))(((((.(((....))).)))))....))).)))))..)-----)) ( -29.10)
>DroAna_CAF1 787 94 - 1
----GGCCA---UUGUUAAGAUUAUUGUUGAUGUAGGACAGAUAGUUGUUGUUAUCGCCCAGGCCAUUCGGCAGGGGCAGGAGGCUUUCAGCCACCGAAGU
----((((.---.................((((.(.(((((....))))).)))))((((..(((....)))..)))).)).(((.....))).))..... ( -28.20)
>consensus
_GCUGACCA___UUGUUCAGAUUGUUAUUGAUAUAGGACAAGUAAUUGUUAUUAUCGCCCAGGCCAUUGGGCAGGGGCAGAAGACUAUCGCCUU_____GG
...................(((.(((...((((...(((((....)))))..))))((((..(((....)))..))))....))).)))............ (-19.38 = -19.25 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:55 2006