Locus 3895

Sequence ID 2R_DroMel_CAF1
Location 12,864,789 – 12,864,895
Length 106
Max. P 0.852642
window6290

overview

Window 0

Location 12,864,789 – 12,864,895
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 95.40
Mean single sequence MFE -23.03
Consensus MFE -21.45
Energy contribution -21.57
Covariance contribution 0.12
Combinations/Pair 1.06
Mean z-score -1.80
Structure conservation index 0.93
SVM decision value 0.79
SVM RNA-class probability 0.852642
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12864789 106 + 20766785
AUUUUGCUGGUUGCCUUGCUUGCUGGUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC
.....((.(((((((..((..((..(((((((..((..((.......))..))...(((((((....)))))))..)))))))..))..))..)))..)))).)). ( -23.20)
>DroSim_CAF1 220072 106 + 1
AUUUUGCUGGUCGCCUUGCUUGCUGGUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC
.....((.(((((((..((..((..(((((((..((..((.......))..))...(((((((....)))))))..)))))))..))..))..)))..)))).)). ( -24.70)
>DroEre_CAF1 212205 101 + 1
AUUUUGCUGGUCGCCUUGCU-----GUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC
........(((.(((..(((-----(...(((((((..((...........(((..(((((((....)))))))...)))))..))))))).))))..)))..))) ( -21.00)
>DroYak_CAF1 218194 101 + 1
AUUUUGCUGGUCGCCUUGCU-----GCAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGCUUGGCCUGCC
........(((.(((..(((-----(((.(((((((..((.......))..(((..(((((((....)))))))...)))))))))).)))..)))..)))..))) ( -23.20)
>consensus
AUUUUGCUGGUCGCCUUGCU_____GUAUGCAAAUAUUUGUUAACUUCAUUUGCUCUGAAUUAAAUAUAAUUUACAUGCAUAUUUGUUUGCCCGGUUUGGCCUGCC
........(((.(((..(((....((((.(((((((..((.......))..(((..(((((((....)))))))...)))))))))).)))).)))..)))..))) (-21.45 = -21.57 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:41 2006