Locus 3886

Sequence ID 2R_DroMel_CAF1
Location 12,861,028 – 12,861,119
Length 91
Max. P 0.672539
window6275

overview

Window 5

Location 12,861,028 – 12,861,119
Length 91
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 83.47
Mean single sequence MFE -26.62
Consensus MFE -13.00
Energy contribution -14.16
Covariance contribution 1.16
Combinations/Pair 1.14
Mean z-score -2.62
Structure conservation index 0.49
SVM decision value 0.30
SVM RNA-class probability 0.672539
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12861028 91 - 20766785
CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA
.((((..(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))))))............. ( -29.60)
>DroGri_CAF1 246530 94 - 1
GUAAAAUGCAAACAAAUUUGGUAAAGGCAAAUGGUCAAUGUUUGUUUAUGCAUAGAAAGCGAGCCAAA--GGCAAAGUGCUU--UGC---CACGUAACAAA
......(((.......((((((..(((((((((.....))))))))).(((.......))).))))))--((((((....))--)))---)..)))..... ( -21.20)
>DroSim_CAF1 216343 91 - 1
CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA
.((((..(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))))))............. ( -29.60)
>DroEre_CAF1 208530 91 - 1
CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCAAAAGUGUGUGUUGCGAGCCCGGUACAAA
(((...((((((((.((((((............)))))).((((((-((((....).))---------)))))))....))).)))))....)))...... ( -22.50)
>DroYak_CAF1 214342 91 - 1
CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU-GGCCAUAGGAGC---------CGGCCAAAGUGUUUGUUUCCAGCCCGGUACAAA
(((....(((((((..(((((....(((..(((((((........)-))))))....))---------).)))))..)))))))...)))........... ( -30.20)
>consensus
CUGAAAUGCAAACAAAUUGGCAAAAGGCAAAUGGUCAAUAUUUGCU_GGCCAUAGGAGC_________CGGCCAAAGUGUUUGUUUCGAGCCCGGUACAAA
.......(((((((..(((((....((((((((.....))))))))..((.......))...........)))))..)))))))................. (-13.00 = -14.16 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:26 2006