| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,860,128 – 12,860,227 |
| Length | 99 |
| Max. P | 0.996564 |
| Location | 12,860,128 – 12,860,227 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 68.90 |
| Mean single sequence MFE | -19.79 |
| Consensus MFE | -10.84 |
| Energy contribution | -11.52 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.55 |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.996564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12860128 99 - 20766785 AAAUGGCAAUUUCUGAUUUCGGCAGUG---GCCCUAUCUCACUGCCGUAUUUUCGUUUCAUUUGCUCAUUUAACCUGCUCUCCA--GCUACCCUCCCUC----------------CACCA (((((((((....(((...((((((((---(.......))))))))).....)))......)))).))))).....(((....)--))...........----------------..... ( -22.70) >DroGri_CAF1 245159 113 - 1 GAACAGCAGCUGCUUAUAUGUGAAUUAUCUGCUGU---UUGUUACCAGGUAUUUGUUGCAUUUGUUG--UUUACCUACUCUUAG--AUUAGCUCAUUUUCACCACUGUUACCGCACACCU ....(((((.((.......(((((......(((((---(((.....(((((......(((.....))--).))))).....)))--).)))).....))))))))))))........... ( -17.01) >DroSim_CAF1 215485 101 - 1 AAAUGGCUAUUUCUGAUAUCGGUAGUG---GCCCUAUCUCACUGCCGUAUUUUCGUUUCAUUUGCUCAUUUAACCUGCGCUCCUCUCCCUCCCUCCUCC----------------CACCA (((((((......(((...((((((((---(.......))))))))).....)))........)).)))))............................----------------..... ( -16.84) >DroEre_CAF1 207668 99 - 1 AAAUGGCAAUUUCUGAUUUCGGUAGUG---GCUCUAUCUCACUGCCGUAUUUUCGUUUCAUUUGCUCAUUUAACCUGCUCUCCA--GUUCCCUUCCCUU----------------UCCCA (((((((((....(((...((((((((---(.......))))))))).....)))......)))).)))))...(((.....))--)............----------------..... ( -19.70) >DroYak_CAF1 213416 100 - 1 AAAUGGCAAUUUCUGAUUUCGGCAGUG---GCUCUAUCUCACUGCCGUAUUUUCGUUUCAUUUGCUCAUUUAACCUGCUCUCCA-UGUUUGCCACCCUU----------------UACCA ...((((((.....((...((((((((---(.......))))))))).....)).........((...........))......-...)))))).....----------------..... ( -22.70) >consensus AAAUGGCAAUUUCUGAUUUCGGCAGUG___GCUCUAUCUCACUGCCGUAUUUUCGUUUCAUUUGCUCAUUUAACCUGCUCUCCA__GUUACCCUCCCUU________________CACCA (((((((((....(((...((((((((............)))))))).....)))......)))).)))))................................................. (-10.84 = -11.52 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:25 2006