Locus 3875

Sequence ID 2R_DroMel_CAF1
Location 12,835,162 – 12,835,267
Length 105
Max. P 0.940176
window6260

overview

Window 0

Location 12,835,162 – 12,835,267
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 80.77
Mean single sequence MFE -31.00
Consensus MFE -23.58
Energy contribution -22.70
Covariance contribution -0.88
Combinations/Pair 1.17
Mean z-score -2.16
Structure conservation index 0.76
SVM decision value 1.31
SVM RNA-class probability 0.940176
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12835162 105 + 20766785
AAACUGGGAGGUGGUUAGCUAGAGGUAGCUGGGCCAUUGGGUGGUUCGCUGCCUGGUGGAUGGUGCCAGGAUGAUGCCAGAAUGGGAAAUGGCCUAAGAGGAAUG
...((...((((.(((..(((..((((.(....((((..((..(....)..))..))))..).)))).((......))....)))..))).)))).))....... ( -33.90)
>DroSec_CAF1 179061 90 + 1
AAACUGGAAGGUGGUUAGCUAGAGGUGGCUGGUCCACUGUG---------------UGGAUGGUGCCAGGAUGAUGCCAGGAUGGGAAAUGGCCUAAGAGGAAUG
...((((..((((((((((((....))))))).))))).(.---------------(((......))).)......))))..((((......))))......... ( -24.70)
>DroEre_CAF1 182079 100 + 1
AAACUGGGAGGUGGUUAGCUAGA--UGGCUGGGCUAUCGGGUGGUUCGUUGGC---UGGAUGGUGCCAGUGUGCUGCCAGGAUGGGAAAUGGCCUAAAAGGAAUG
...((...((((.(((((((...--.))))...(((((.((..((.(((((((---........))))))).))..))..)))))..))).))))...))..... ( -34.40)
>consensus
AAACUGGGAGGUGGUUAGCUAGAGGUGGCUGGGCCAUUGGGUGGUUCG_UG_C___UGGAUGGUGCCAGGAUGAUGCCAGGAUGGGAAAUGGCCUAAGAGGAAUG
...((((..((((((((((((....))))))).)))))..................(((......)))........))))..((((......))))......... (-23.58 = -22.70 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006