Locus 3869

Sequence ID 2R_DroMel_CAF1
Location 12,798,302 – 12,798,411
Length 109
Max. P 0.600421
window6250

overview

Window 0

Location 12,798,302 – 12,798,411
Length 109
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -32.72
Consensus MFE -24.45
Energy contribution -24.87
Covariance contribution 0.42
Combinations/Pair 1.05
Mean z-score -1.19
Structure conservation index 0.75
SVM decision value 0.13
SVM RNA-class probability 0.600421
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12798302 109 - 20766785
CAGCGACG---ACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGAGGCAAAA-GAAAAUGCGGCACUCG-ACUGAAAGGAGCG
..((((.(---....)))))((..(((.........(((((.....)))))(((((((...(((((((..(((...)))....-.....))))))).)))-).))).))).)). ( -31.90)
>DroVir_CAF1 190686 107 - 1
CGCCAACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGCGGCAGAA-AAAAAUGCUGCAGCCAGAGAUAC---AGCG
........---......((((((.((((.......((((((.....))))))((((...((((((((.......)))))))).-...)))).......))).).)))---.))) ( -29.90)
>DroPse_CAF1 130825 105 - 1
ACGCGACGAGGACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCGGCGGCACAAGGAGAAUGCGCCAAAU---------GGAAAA
.((((.((((.....)))))))).(((...(((.(((((((.....))))).)).)))...((((((.......))))))..)))........((....---------)).... ( -34.20)
>DroGri_CAF1 162744 106 - 1
CUUCGACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAAUGCCAGCGGCAAAA-GAAAAUGCUGCAGCCUCACAGAA---UGU-
.((((.((---(....))))((((.(((.......((((((.....))))))((((..(((((((((.......))))).)))-)..))))...)))..)))).)))---...- ( -31.00)
>DroMoj_CAF1 235379 107 - 1
CGCCAACG---ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAAUGCCAGCGGCAAAG-GAAAAUGCUGCAGCCGCAGAUAC---UGCG
........---......((((((............((((((.....))))))((((..(((((((((.......)))))))))-...))))((((....)))).)))---.))) ( -35.10)
>DroPer_CAF1 122587 105 - 1
ACGCGACGAGGACAUCUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCGGCGGCACAAGGAGAAUGCGCCAAAU---------GGAAAA
.((((.((((.....)))))))).(((...(((.(((((((.....))))).)).)))...((((((.......))))))..)))........((....---------)).... ( -34.20)
>consensus
CCGCGACG___ACAACUCGCGUGACCUGAAUUAUUGGUGGCAUAUUGCCACUCAUUGACUUUGCCGCAACGCCAGCGGCAAAA_GAAAAUGCGGCAGCC__A_A_A____AGCG
..................((((........(((.(((((((.....))))).)).))).((((((((.......))))))))......))))...................... (-24.45 = -24.87 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006