Locus 3863

Sequence ID 2R_DroMel_CAF1
Location 12,774,485 – 12,774,583
Length 98
Max. P 0.814425
window6243

overview

Window 3

Location 12,774,485 – 12,774,583
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 97.37
Mean single sequence MFE -12.53
Consensus MFE -11.85
Energy contribution -12.02
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.03
Structure conservation index 0.95
SVM decision value 0.66
SVM RNA-class probability 0.814425
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12774485 98 + 20766785
U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG
(---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60)
>DroSec_CAF1 118388 98 + 1
U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG
(---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60)
>DroSim_CAF1 123978 98 + 1
U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCACUG
(---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.30)
>DroEre_CAF1 119482 98 + 1
U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG
(---((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)))... ( -13.60)
>DroYak_CAF1 124315 101 + 1
UAAAGCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG
....((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)).... ( -13.10)
>DroAna_CAF1 109418 98 + 1
U---GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUACACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAACA
(---((...(((((.((((......)))))................(((............)))...........))))((.....)).......)))... (  -8.00)
>consensus
U___GCCAAAUCCGACAAUUAAAUUAUUGCAUGACAAAACAUGCACCGCAAAAUAUUCAAAGCGCGCCAAAAACAGGAUGUAAACAACAAUAACAGCAGUG
....((...((((..............((((((......)))))).(((............)))...........))))((.....)).......)).... (-11.85 = -12.02 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:56 2006