| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,764,474 – 12,764,581 |
| Length | 107 |
| Max. P | 0.792467 |
| Location | 12,764,474 – 12,764,581 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 86.48 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -22.25 |
| Energy contribution | -22.73 |
| Covariance contribution | 0.49 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.792467 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12764474 107 + 20766785 ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGACUCUGACGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGUCACUAAUACUU---UCAGAUCCCUUGACC .......((((...(((((((((...)))))))))..)))).(((((..(((((((((.(((((........))))).)))))).)))....---))))).......... ( -30.00) >DroPse_CAF1 99951 100 + 1 ACUUGAUUCGUCCUUUG----------GCCUGUGAUUGUGACUCCAAUGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGCCACUAAUACACCCUUCAUACCCAUUGAUU .........(((...((----------(..(((((..(((.(......)...(((.((.(((((........))))).)).))).....)))...))))).)))..))). ( -13.80) >DroSec_CAF1 106065 107 + 1 ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGAUUCUGACGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGUCACUAAUACUU---CCAGAUCCCUUGACC .......((((...(((((((((...)))))))))..)))).((((...(((((((((.(((((........))))).)))))).)))....---.)))).......... ( -28.20) >DroSim_CAF1 113951 107 + 1 ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGACUCUGACGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGUCACUAAUACUU---CCAGAUCCCUUGACC .......((((...(((((((((...)))))))))..)))).((((...(((((((((.(((((........))))).)))))).)))....---.)))).......... ( -28.00) >DroEre_CAF1 109289 102 + 1 ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGACUCUGACGAUUGUGACGCAUACAAAUUUCGAUGUGUUUGUCACUAAUACUU---CCAGAUCCCA----- .......((((...(((((((((...)))))))))..)))).((((...(((((((((.(((((........))))).)))))).)))....---.)))).....----- ( -28.00) >DroYak_CAF1 114017 107 + 1 ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGACUCUGGCGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGUCACUAAUACAU---CCAGAUCCCUUGACC .......((((...(((((((((...)))))))))..)))).(((((..(((((((((.(((((........))))).)))))).)))....---))))).......... ( -31.60) >consensus ACUUGAUUCGCCUUUCGCAGUGAUUGUUAUUGCGACUGCGACUCUGACGAUUGUGACGCAUACAAAUUUCAAUGUGUUUGUCACUAAUACUU___CCAGAUCCCUUGACC ....((.((((...(((((((((...)))))))))..)))).))........((((((.(((((........))))).)))))).......................... (-22.25 = -22.73 + 0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:52 2006