| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,763,752 – 12,763,842 |
| Length | 90 |
| Max. P | 0.902982 |
| Location | 12,763,752 – 12,763,842 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.06 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.902982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12763752 90 + 20766785 ----UCC---------AUUCCU-------AUCCAUAAGUAGGCUACACC--AGGCGACUUGCACUGCGUUUUAUUAUCCU------CACUUU--UUUACAACGCCUGCAUUGUUAGCCUG ----...---------...(((-------((......)))))......(--(((((((.((((..(((((.((.......------......--..)).))))).))))..))).))))) ( -20.96) >DroSec_CAF1 105345 99 + 1 ----CCCCAACACAAUUUUCCU-------AUCCAUAAGUAGGCUACACC--AGGCGACUUGCACUGUGUUUUAUUAUCCU------CACUUU--UUUACACCGCCUGCAUUGUUAGCCUG ----..................-------.........(((((((((.(--(((((.........(((............------)))...--.......))))))...)).))))))) ( -19.41) >DroSim_CAF1 113246 99 + 1 ----CCCCAACACAAUUUUCCU-------AUCCAUAAGUAGGCUACACC--AGGCGACUUGCACUGUGUUUUAUUAUCCU------CACUUU--UUUACACCGCCUGCAUUGUUAGCCUG ----..................-------.........(((((((((.(--(((((.........(((............------)))...--.......))))))...)).))))))) ( -19.41) >DroEre_CAF1 108583 96 + 1 ----C-CUCAUGCAAUUUUCCU-------AUCCAUAAGUAGGCUACACC--AGGCGACUUGCACUGUGUUUUAUUAUCCU------UCUUUUU--UU--GCCGCCUGCAUUGUUAGCCUG ----.-................-------.........(((((((((.(--(((((....(((.................------.......--.)--))))))))...)).))))))) ( -17.91) >DroYak_CAF1 113281 107 + 1 ----CACCCACACAAUUUUCCU-------AUCCAUAAGUAGGCUACACC--AGGCGACUUGCCCUGUGUUUUAUUAUCCUCCUCCUUCUUUUUUUUUGCACCGCCUGCAUUGUUAGCCUG ----..................-------.........(((((((((.(--(((((.........((((............................))))))))))...)).))))))) ( -18.49) >DroAna_CAF1 97476 111 + 1 AAUCCACCCUCAGAGUUUUCCCUGGCACCGACCAUAAGUAGGCUACACCCCCGUCGACUUGCACUUUGUUUUAUUUU-UU------CUCCUU--UUCAUCCUGGCGGCUUUGUUAGACUG .....................(((((((((.(((.((((.(((.........))).))))((.....))........-..------......--.......))))))...)))))).... ( -14.20) >consensus ____CCCCCACACAAUUUUCCU_______AUCCAUAAGUAGGCUACACC__AGGCGACUUGCACUGUGUUUUAUUAUCCU______CACUUU__UUUACACCGCCUGCAUUGUUAGCCUG ......................................(((((((((....(((((.............................................)))))....)).))))))) (-13.59 = -13.06 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006