Locus 3857

Sequence ID 2R_DroMel_CAF1
Location 12,748,308 – 12,748,409
Length 101
Max. P 0.931313
window6235

overview

Window 5

Location 12,748,308 – 12,748,409
Length 101
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 86.79
Mean single sequence MFE -30.34
Consensus MFE -19.82
Energy contribution -20.32
Covariance contribution 0.50
Combinations/Pair 1.08
Mean z-score -3.24
Structure conservation index 0.65
SVM decision value 1.21
SVM RNA-class probability 0.931313
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12748308 101 + 20766785
AUGAAAGGUUUUUCAAGUAACCGUC---GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA
.......(((((((.....((((((---((..(((.....((((((.(((...((((....))))))).))))))....)))..))))))))...))))))).. ( -33.90)
>DroSec_CAF1 94743 101 + 1
AUGAAAGGUUUUUCAAGUAACCGUC---GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUUUGGUUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA
.......(((((((.....((((((---((((((........))))..((((...((((((((...)))).))))...))))..))))))))...))))))).. ( -27.50)
>DroSim_CAF1 102018 101 + 1
AUGAAAGGUUUUUCAAGUAACCGUC---CAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA
.......(((((((.....((((((---.(..(((.....((((((.(((...((((....))))))).))))))....)))..).))))))...))))))).. ( -30.10)
>DroEre_CAF1 95905 84 + 1
AUGAAAGGUUUUUCAAGUAAGCGUC---GAGC--UGCGAG---------------CUUACUAGUUUGUGGCUAGGAAAAGUGAACUGACGCUGUGGAAAAGCCA
......((((((((.....((((((---.(((--..((((---------------((....))))))..)))......((....))))))))...)))))))). ( -35.20)
>DroYak_CAF1 102702 104 + 1
AUGAAAGGUUUUUCAAGUAAACGUCGUCGAGCGAUGCGAGCUAAGCGACAUUCAGCUGACGAGUUUGUGGCUAGGAAAAGUGAAUUGACAGUGUGGAAAAGCAA
.......(((((((........(((((..(((.......)))..))))).....((((.(((.....(.(((......))).).))).))))...))))))).. ( -25.00)
>consensus
AUGAAAGGUUUUUCAAGUAACCGUC___GAGCUAUGAGAGCUUAGCGACAUUCAGCUUACUAGUUUGUGGCUAGGAAAAGUGAAUUGACGGUGUGGAAAAGCAA
.......(((((((.....((((((.....((.....(((((...........))))).(((((.....))))).....)).....))))))...))))))).. (-19.82 = -20.32 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006