Locus 3855

Sequence ID 2R_DroMel_CAF1
Location 12,741,699 – 12,741,798
Length 99
Max. P 0.817140
window6230

overview

Window 0

Location 12,741,699 – 12,741,798
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.99
Mean single sequence MFE -20.78
Consensus MFE -14.09
Energy contribution -14.20
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.62
Structure conservation index 0.68
SVM decision value 0.67
SVM RNA-class probability 0.817140
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12741699 99 + 20766785
CAUCAGCCAA-AUACUUCCGCUUAGGGACGAUCUCU--CCCCUAACUCUAUAUCCGAU-----U-------------UUUUUUUAUUUUGUUCACACAAAGUGUCAAGUGUUUGAGUGGC
..(((..(((-((((((....((((((..(....).--.)))))).............-----.-------------......((((((((....))))))))..)))))))))..))). ( -19.90)
>DroSec_CAF1 88022 97 + 1
CAUCAGCCAA-AUACUUCCGCUUAGGGAUGAUCUCU--CCCCUAACCCUAUAUCCUCA-----U-------------UU--UUUUUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC
..(((..(((-((((((.(((((((((..(....).--.)))))).............-----.-------------..--.....((((......)))))))..)))))))))..))). ( -19.60)
>DroSim_CAF1 95308 97 + 1
CAUCAGCCAA-AUACUUCCGCUUAGGGAUGAUCUCU--CCCCUAACCCUAUAUCCUCA-----U-------------UU--UUUUUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC
..(((..(((-((((((.(((((((((..(....).--.)))))).............-----.-------------..--.....((((......)))))))..)))))))))..))). ( -19.60)
>DroEre_CAF1 89363 104 + 1
CAUCAGCCAA-ACACUUCCGUUUAGGGACGAUCUCG--CCCCUAACUCUGCAUCCGAUACCCUU-------------UUUUUAUAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC
..(((..(((-((((((....((((((.((....))--.))))))...................-------------.....((((((((......)))))))).)))))))))..))). ( -24.90)
>DroYak_CAF1 95830 117 + 1
CAUCAGCCAA-ACACUUCCGUUUAGGGACGAUCUCU--CCCCUAACCCUAUAUCCUAUAUCCCUUAUCCUUUUUUAUUUUCUACAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC
..(((..(((-((((((..(((..((((.(....))--)))..)))....................................((((((((......)))))))).)))))))))..))). ( -24.10)
>DroAna_CAF1 81938 100 + 1
CAGCCGCCAAAAUACUUCCGUUUAUGUCCGAUCUGUAGCCCCUAACUCCGCGUAUUUA-----U-------------UU--UCUGUAUCUCGCACAAAAAGUGUCAAGUGUUUAAGUGGC
..(((((..((((((((.....(((((..((....(((...)))..)).)))))....-----.-------------..--..........((((.....)))).))))))))..))))) ( -16.60)
>consensus
CAUCAGCCAA_AUACUUCCGCUUAGGGACGAUCUCU__CCCCUAACCCUAUAUCCUAA_____U_____________UU__UUUAUUUUGCUCACACAAAGUGUCAAGUGUUUGAGUGGC
.....((((..((((((....((((((............))))))...............................................(((.....)))..)))))).....)))) (-14.09 = -14.20 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:43 2006