| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,741,295 – 12,741,392 |
| Length | 97 |
| Max. P | 0.510257 |
| Location | 12,741,295 – 12,741,392 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.76 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -17.60 |
| Energy contribution | -18.77 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.54 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12741295 97 - 20766785 CCCGG--UAUCCAUCGGAGCUAACUGAGUCAUUUGAAUACCAAAUUAAGUGCU---UCUCAGCC-GGCUAAGGAGUCACAAGAA-----------------GGAGCCGGGAGGACUUGCA (((((--(.(((.((..((((..(((((.(((((((........)))))))..---.)))))..-))))..))..((....)).-----------------))))))))).......... ( -31.00) >DroSec_CAF1 87603 94 - 1 CCCGG--UAUCCAUCGGAGCUAACUGAGUCAUUUAAAUACCAAAUUAAGUGCU---UCUCAGCC-GUCUAAGGAGCCACAA--------------------GGAGCCGGGAGGACUUGCA (((((--(.(((...(..(((..(((((.(((((((........)))))))..---.)))))((-......)))))..)..--------------------))))))))).......... ( -29.20) >DroSim_CAF1 94889 94 - 1 CCCGG--UAUCCAUCGGAGCUAACUGAGUCAUUUGAAUACCAAAUUAAGUGCU---UCUCAGCC-GGCUAAGGAGCCACAA--------------------GGAGCCGGGAGGACUUGCA (((((--(.(((...........(((((.(((((((........)))))))..---.)))))..-((((....))))....--------------------))))))))).......... ( -31.10) >DroEre_CAF1 88567 114 - 1 CUCGC--UAUCCAUCGGAGCAAACUGAGUCAUUUGAAUACCAAAUUAAGUGCU---UCUCAGCC-GGCUAAGGAGCCACAAGGAGCCACAAGGAGCCACCAGGAGUCGGGCGGACUUGCA ...((--..(((..(.((.....(((((.(((((((........)))))))..---.)))))((-((((....))))....((..((....))..))....))..)).)..)))...)). ( -32.10) >DroYak_CAF1 95396 105 - 1 CCCGGUGUAUCCAUCGGAG----CUGAGUCAUUUGAAUACCAAAUUAAGUGCU---UCUCAGCC-GGCUAAGGAGCCACAAGGAGAC-------GCCACCAGGAGCCGGAAGGACUUGCA ...(((((.(((....(.(----(((((.(((((((........)))))))..---.)))))))-((((....))))....))).))-------)))..((((..((....)).)))).. ( -38.60) >DroAna_CAF1 81645 108 - 1 CCGGG--UAUCUGUCAUAAGUAACUUAGUCAUUUGAAUACCAAAUGAAGUGCUCCGUCUUGGCCUGGCUGGAAAGCCACAAGGAUCCUGGGA--GAGA-------CAAGGCGGAC-UGCA ....(--((((((((...((((......(((((((.....)))))))..))))..(((((..(((((((....))))...((....))))).--))))-------)..)))))).-))). ( -34.80) >consensus CCCGG__UAUCCAUCGGAGCUAACUGAGUCAUUUGAAUACCAAAUUAAGUGCU___UCUCAGCC_GGCUAAGGAGCCACAAGGA_________________GGAGCCGGGAGGACUUGCA (((((....(((...........(((((.(((((((........)))))))......)))))...((((....))))........................))).))))).......... (-17.60 = -18.77 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006