| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,716,368 – 12,716,459 |
| Length | 91 |
| Max. P | 0.981459 |
| Location | 12,716,368 – 12,716,459 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.37 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -14.16 |
| Energy contribution | -13.83 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.89 |
| SVM RNA-class probability | 0.981459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12716368 91 + 20766785 AUAAAUAAAACUUAAAGCAACUCACAUUAAUGAG-----GCC-GCUUGG------CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGCCAGCAAUUC-GAA---------------- ................((...(((......)))(-----(((-((...(------((((((.((..........)).)))))))..)))))).)).....-...---------------- ( -30.50) >DroPse_CAF1 67511 95 + 1 AUAAAUAAAACUUAAAGCAACUCACAUUAAUGAGUACAGCCC-GCGUGG------CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGUCGG-ACUUC-GGG---------------- ..........((..((((.(((((......)))))...(.((-(((((.------((((((.((..........)).))))))))))))).).)-.))).-.))---------------- ( -32.10) >DroGri_CAF1 67782 108 + 1 AUAAAUAAAACUUAAAGCAACUCAAAUUAAUGAG-----GCCCGCUUGG------CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGCAAGCACACA-CAAGCAAAAAGAGCCAAAA ................((..((((......))))-----....((((((------((((((.((..........)).)))))))..(((.......))).-))))).......))..... ( -30.90) >DroWil_CAF1 91408 97 + 1 AUAAAUAAAACUUAAAGCACCUUUCAUUAAUAAG-----GCC-GGUCGGCUUAGACGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGCAAG-ACCACAGAA---------------- ................((..............((-----(((-....)))))....(((((.((..........)).)))))))..((((....-.))))....---------------- ( -24.00) >DroMoj_CAF1 119391 107 + 1 AUAAAUAAAACUUAAAGCAACUCACAUUAAUGAG-----GCC-GGUUGG------CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGCAAGCACACA-CAAGCGAAAGGAGCUGGAA ...............(((..((((......))))-----..(-(.((((------((((((.((..........)).)))))))..(((.......))).-))).))......))).... ( -29.60) >DroPer_CAF1 57715 95 + 1 AUAAAUAAAACUUAAAGCAACUCACAUUAAUGAGUACAGCCC-GCGUGG------CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGUCGG-ACUUC-GGG---------------- ..........((..((((.(((((......)))))...(.((-(((((.------((((((.((..........)).))))))))))))).).)-.))).-.))---------------- ( -32.10) >consensus AUAAAUAAAACUUAAAGCAACUCACAUUAAUGAG_____GCC_GCUUGG______CGCCACUUGGCAUGACAAACAUGUGGCGCACGUGGCAAG_ACUUC_GAA________________ ....................((((......))))......................(((((.((((...(((....))).)).)).)))))............................. (-14.16 = -13.83 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:31 2006