Locus 384

Sequence ID 2R_DroMel_CAF1
Location 2,363,302 – 2,363,422
Length 120
Max. P 0.737588
window752

overview

Window 2

Location 2,363,302 – 2,363,422
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -38.90
Consensus MFE -30.06
Energy contribution -31.58
Covariance contribution 1.52
Combinations/Pair 1.06
Mean z-score -1.81
Structure conservation index 0.77
SVM decision value 0.44
SVM RNA-class probability 0.737588
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2363302 120 + 20766785
UUAAAUCGCUGCGAGUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC
.....((((((.((((((((.....))))))(((((((((..........((((....)))).....(((((((((.........).))))))))..)))))))))...))))))))... ( -42.50)
>DroSec_CAF1 12823 120 + 1
UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC
.....((((((.((.(((((.....))))).(((((((((..........((((....)))).....(((((((((.........).))))))))..)))))))))...))))))))... ( -39.20)
>DroSim_CAF1 12927 120 + 1
UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCGGGGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGUUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC
.....((((((.((.(((((.....))))).(((((((((........((((((...))))))....(((((((((.........).))))))))..)))))))))...))))))))... ( -37.60)
>DroEre_CAF1 12605 119 + 1
UUAAACAG-UGCGAAUGCUCAUGGCGAGCACUGACCGCAUACUGCAAUAUCCCGUGGCCGGUUUCAAUUUAUGGCCACACGAAGCGCGCUAUGAAAAAUGUGGUCAGCAUGCAGCGAGGC
........-((((..(((((.....)))))((((((((((.............(((((((...........))))))).((.((....)).))....))))))))))..))))....... ( -37.80)
>DroYak_CAF1 12309 119 + 1
UUUAACCGCUGCGAAUUUUCAUGGCGAGCACUGACGGCACACUUCAAUAUCCCGUGGCCGGUUUCAAUUUAUGGCCACACGAAAU-CGCUAUGAAAAAUGUGGUCAACAUUCAGCGAGGC
......(((((....((((((((((((.(..(((.(.....).))).......(((((((...........)))))))..)...)-)))))))))))((((.....)))).))))).... ( -37.40)
>consensus
UUAAAUCGCUGCGAAUGUUCAUGGCGAGCACUGACCGCAUACUCCAAUAUCCCGUGGCCGGGUUCAAUUUAUGGCCACACGAAACGCGCUAUGAAAAAUGUGGUCAACAUCCAGCGAGGC
.....((((((.((.(((((.....))))).(((((((((.............(((((((...........))))))).((.....)).........)))))))))...))))))))... (-30.06 = -31.58 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:04 2006