| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,653,018 – 12,653,114 |
| Length | 96 |
| Max. P | 0.846445 |
| Location | 12,653,018 – 12,653,114 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.53 |
| Mean single sequence MFE | -32.55 |
| Consensus MFE | -19.68 |
| Energy contribution | -19.38 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12653018 96 - 20766785 AUCCUCCAGAACUCUG------------------------GUCUGGCUGCCGGAAUCCUCCAGUACUCUGGCCUGGCUGUUGGAAUCCUCCAGUACUCUGGCCUGGCUGUUGGAAUCCCC ..((.((((....)))------------------------)...)).....(((.(((..((((.....((((.(..(((((((....)))))))..).))))..))))..))).))).. ( -33.80) >DroPse_CAF1 13441 120 - 1 AACCUCCCUGGCCUUGUCCUGGCUGCUGGAAACCUCCUUCACCUGGCUGCUGGAAUCCUCCUUGACCUUGUCCUGGCUGCUGGAAUCCUCCUUGACCUUGUCCUGGCUGCUGGAAUCCUC ....(((..((((.......))))...)))............(..((.((((((.(((.((..(((...)))..)).....))).))).....(((...)))..))).))..)....... ( -26.90) >DroSec_CAF1 11174 96 - 1 AUCCUCCAGUACUCUG------------------------GCCUGGCUGUUGGAAUCCUCCAAUACUCUGGCCUGGCUGUUGGAACCCUCCAGUACUCUGUCCUGGCUGCCGGAAUCCUC .(((..((((.....(------------------------(((.(..(((((((....)))))))..).))))..))))..)))....(((.(((..(......)..))).)))...... ( -31.50) >DroSim_CAF1 12741 96 - 1 AUCCUCCAAUACUCUG------------------------GCCUGGCUGUUGGAAUCCUCCAAUACUCUGGCCUGGCUGUUGGAAUCCUCCAAUACUCUGGCCUGGCUGUUGGAACCCUC ....(((((((..(.(------------------------(((.(..(((((((....(((((((..(......)..)))))))....)))))))..).)))).)..)))))))...... ( -35.50) >DroEre_CAF1 10058 96 - 1 AUCCUCCAGAAUUCUG------------------------GCCUGGCUGUUGGAGUUCUCCAGAAUUCUGGCCUGGCUGUUGGAAUCCUCCAGAAUUCUGGCCUGGCUGCUGGAAUCCUC ..((.(((((((((((------------------------(((.((((...(((((((....))))))))))).))))...(((....)))))))))))))...)).............. ( -36.60) >DroYak_CAF1 12028 96 - 1 AUCCUCCAGAAUUCUG------------------------GCCUGGCUGUUGGAAUCCUCCAGAACUCUGGCCUGGCUGUUGGAAUCCUCCAGAACUCUGGCCUGGCUGUUGGAAUCCUC .(((..((((.(((((------------------------(...((.(......).)).)))))).))))(((.((((.(((((....)))))......)))).)))....)))...... ( -31.00) >consensus AUCCUCCAGAACUCUG________________________GCCUGGCUGUUGGAAUCCUCCAGUACUCUGGCCUGGCUGUUGGAAUCCUCCAGUACUCUGGCCUGGCUGCUGGAAUCCUC ..........................................(((((.((((((....)))........((((.((...(((((....)))))...)).)))).))).)))))....... (-19.68 = -19.38 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:02 2006