Locus 3830

Sequence ID 2R_DroMel_CAF1
Location 12,648,822 – 12,648,916
Length 94
Max. P 0.886261
window6183

overview

Window 3

Location 12,648,822 – 12,648,916
Length 94
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -32.53
Consensus MFE -19.03
Energy contribution -21.12
Covariance contribution 2.09
Combinations/Pair 1.29
Mean z-score -2.32
Structure conservation index 0.58
SVM decision value 0.94
SVM RNA-class probability 0.886261
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12648822 94 - 20766785
UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCCAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCGAA
((((.(((....(((----(((((((((((((((......------------....))))))))..((((.((....)).))))))))))...))))....))).)))). ( -31.50)
>DroSec_CAF1 7269 94 - 1
UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCGAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA
...(((((((.((((----(((((((((((((((......------------....))))))))..(((((((....)))))))))))))...)))).).))).)))).. ( -36.50)
>DroSim_CAF1 8877 94 - 1
UCGGGGUCCGAGAGG----CAUUAGCUUGUUAGUUCUACA------------ACCUGCUGGCAAAUGUGCGAAUAUGUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA
...(((((((.((((----(((((((((((((((......------------....))))))))..(((((((....)))))))))))))...)))).).))).)))).. ( -36.50)
>DroEre_CAF1 7031 93 - 1
UCGGGGUCCGAGAGG----CAUUAGCUUGUCAGUUGUACA------------ACCUGUUGGCAAAUGUGCGGGUAUAUUUGCACGCUGAUAAGG-CUACAUGGCACCCAA
..(((((((....))----(((((((((((((((.((.((------------(....)))(((((((((....))))))))))))))))))).)-))).))))).))).. ( -33.50)
>DroYak_CAF1 9301 94 - 1
UCGGGGUCCGAGAGG----CAUUAGCUUAUUAGUUCUACA------------ACCUACUGGCAAAUGUGCGAGUAUACAUGCACGCUGAUAAGGUCUACAUGGCACCCAA
...(((((((.((((----(.....(((((((((......------------...((((.(((....))).)))).........))))))))))))).).))).)))).. ( -27.97)
>DroPer_CAF1 10496 100 - 1
UCGCAGUCCCAGAGAGCUUUGUUUGCUUGUAAGUUCUACUUCUGGCAAGCACAGCUGCUGGCAAGAGU------GUAUUU----GGCGAUAAGGUGAACAUGGAAACUAA
((((.((((((((.((((.((((((((.(.(((.....)))).)))))))).))))(((......)))------...)))----)).)))...))))....(....)... ( -29.20)
>consensus
UCGGGGUCCGAGAGG____CAUUAGCUUGUUAGUUCUACA____________ACCUGCUGGCAAAUGUGCGAAUAUAUUUGCACGCUGAUAAGGCCUACAUGGCACCCAA
...(((((((..(((.....((((((((((((((......................))))))))..(((((((....)))))))))))))....)))...))).)))).. (-19.03 = -21.12 +   2.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:59 2006