Locus 383

Sequence ID 2R_DroMel_CAF1
Location 2,363,088 – 2,363,203
Length 115
Max. P 0.506671
window751

overview

Window 1

Location 2,363,088 – 2,363,203
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 86.67
Mean single sequence MFE -40.52
Consensus MFE -27.91
Energy contribution -29.35
Covariance contribution 1.44
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value -0.05
SVM RNA-class probability 0.506671
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2363088 115 - 20766785
CCACGCCAGUCAGCCAGCUAUCCAUCAGAA-AAGUUGGCCGGACUUUAAAGAGAUUCCCGAGCGAUUAGCAGGC----AGAGCCGGGCUGGGCGCAUGGCAAACAGUCUGGGCACGGAAA
((..(((((((.(((((((.((.....)).-.)))))))..))))................((.....)).)))----....((((((((.((.....))...))))))))....))... ( -38.00)
>DroSec_CAF1 12601 115 - 1
CCACGCCAGUCAGCCAGCUAUCCAUCAGGA-AAGUUGGCCGGACUUUAAAGAGAUUCCCGAGCGAUUAGCAGGC----GGAGCCGGGCUGGGCGCAUGGCAAACAGUCUGGGCACGGAAA
((.((((((((.(((((((.(((....)))-.)))))))..))))................((.....)).)))----)...((((((((.((.....))...))))))))....))... ( -46.20)
>DroSim_CAF1 12712 116 - 1
CCACGCCAGUCAGCCAGCUAUCCAUCAGGAAAAGUUGGCCAGACUUUAAAGAGAUUCCCGAGCGAUUAGCAGGC----GGAGCCGGGCUGGGCGCAUGGCAAACAGUCUGGGCACGGAAA
((.((((((((.(((((((.(((....)))..)))))))..))))................((.....)).)))----)...((((((((.((.....))...))))))))....))... ( -43.50)
>DroYak_CAF1 12101 109 - 1
---------UCAG-UGUAUAUCCGUCAAGA-AAGUUGGCCGGACUUUAAAGCGAUUCCCGUGCGAUUAGCAGGGAGAGAUAGCCGGGAUGGGCGGAUGGCAAACAGCCUGGGCACGGAAA
---------((.(-(((.(((((((....(-(((((.....))))))...))).(((((.(((.....)))))))).)))).(((((.((.((.....))...)).))))))))).)).. ( -34.40)
>consensus
CCACGCCAGUCAGCCAGCUAUCCAUCAGGA_AAGUUGGCCGGACUUUAAAGAGAUUCCCGAGCGAUUAGCAGGC____AGAGCCGGGCUGGGCGCAUGGCAAACAGUCUGGGCACGGAAA
.......((((.((((((..(((....)))...))))))..))))............(((.((.....))............((((((((.((.....))...))))))))...)))... (-27.91 = -29.35 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:03 2006