Locus 3826

Sequence ID 2R_DroMel_CAF1
Location 12,635,926 – 12,636,039
Length 113
Max. P 0.733345
window6177

overview

Window 7

Location 12,635,926 – 12,636,039
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 98.82
Mean single sequence MFE -36.60
Consensus MFE -36.72
Energy contribution -36.50
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 1.00
SVM decision value 0.43
SVM RNA-class probability 0.733345
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12635926 113 + 20766785
AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA
.(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... ( -37.10)
>DroSec_CAF1 28684 113 + 1
AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUUGCAGGGCAAAGGACAUGCGAGCACCCACA
.(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... ( -35.30)
>DroEre_CAF1 29610 113 + 1
AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGCUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA
...(((((....)))))............(((((((((((((((.((((((((((((((.((.....)).)))))))..)))..))))))).)))))).))).)))....... ( -37.40)
>consensus
AUGCCGGAUGUCUCUGGGUAAUUUAGAUAGCUGCAGUUCUUGUUGCUGCCGCUCAAAGUUGCAUAAUGUCACUUUGAAAGUGUCGCAGGGCAAAGGACAUGCGAGCACCCACA
.(((((.(((((.((..((......((((((.(((((.......))))).))(((((((.((.....)).)))))))...)))).....))..))))))).)).)))...... (-36.72 = -36.50 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:53 2006