| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,634,988 – 12,635,108 |
| Length | 120 |
| Max. P | 0.544064 |
| Location | 12,634,988 – 12,635,108 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.25 |
| Mean single sequence MFE | -47.48 |
| Consensus MFE | -46.94 |
| Energy contribution | -46.78 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12634988 120 - 20766785 GCCUCGCCCUCCUGGCGGUGGCUAACGCCCAAUUCGACACCAACUACGCCUCCGGUCGUAGUGGAAUGGUCCACCUCUUCGAGUGGAAGUGGGACGACAUCGCUGCCGAGUGUGAGAACU ..(((((.(((..((((((((....((((((.(((.((.(((.(((((((...)).))))))))...((....)).......)).))).)))).))...))))))))))).))))).... ( -47.40) >DroSec_CAF1 27735 120 - 1 GCCUCGCCCUCCUGGCGGUGGCCAACGCCCAAUUCGACACCAACUAUGCUUCCGGUCGUAGUGGAAUGGUCCACCUCUUCGAGUGGAAGUGGGACGACAUCGCUGCCGAGUGCGAGAACU ..(((((.(((..((((((((....(((((.....(....)......(((((((.(((..(((((....))))).....))).)))))))))).))...))))))))))).))))).... ( -48.60) >DroSim_CAF1 27764 120 - 1 GCCUCGCCCUGCUGGCGGUGGCCAACGCCCAAUUCGACACCAACUACGCCUCCGGUCGUAGUGGAAUGGUCCACCUCUUCGAGUGGAAGUGGGACGACAUCGCUGCCGAGUGCGAGAACU ..(((((.((..(((((((((....((((((.(((.((.(((.(((((((...)).))))))))...((....)).......)).))).)))).))...))))))))))).))))).... ( -47.30) >DroEre_CAF1 28696 120 - 1 GCCUCGCCCUCCUGGCGGUGGCCAACGCCCAGUUCGACACCAACUACGCCUCCGGUCGCAGUGGAAUGGUGCACCUCUUCGAGUGGAAGUGGGACGACAUCGCUGCCGAGUGCGAGAACU ..(((((.(((..((((((((....((((((.(((..(((((.((((((........)).))))..)))))(((........)))))).)))).))...))))))))))).))))).... ( -47.80) >DroYak_CAF1 28437 120 - 1 GCCUCGCCCUUUUGGCGGUGGCCAACGCCCAAUUCGACACCAACUACGCCUCCGGUCGCAGUGGAAUGGUCCACCUCUUCGAGUGGAAGUGGGACGACAUCGCCGCCGAGUGCGAGAACU ..(((((...(((((((((((....((((((.(((.((.(((.((.((((...)).)).)))))...((....)).......)).))).)))).))...))))))))))).))))).... ( -46.30) >consensus GCCUCGCCCUCCUGGCGGUGGCCAACGCCCAAUUCGACACCAACUACGCCUCCGGUCGUAGUGGAAUGGUCCACCUCUUCGAGUGGAAGUGGGACGACAUCGCUGCCGAGUGCGAGAACU ..(((((.(((..((((((((....((((((.(((.((.(((.(((((((...)).))))))))...((....)).......)).))).)))).))...))))))))))).))))).... (-46.94 = -46.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:52 2006