| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,610,989 – 12,611,081 |
| Length | 92 |
| Max. P | 0.890191 |
| Location | 12,610,989 – 12,611,081 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.95 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.44 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12610989 92 - 20766785 AUAACACCGAAAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACUCUCC-------GAAAGCGAAAAUUGCAGCGGAAGAG-GCGGCCAAUCGGCCAU----UACUAA .............(((...((-----..((((((((((((..(.((....-------...)))..))))))))))))..)))-))((((....))))..----...... ( -23.90) >DroVir_CAF1 5223 81 - 1 AUAGUG-AGAGAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACAC-----------------GAAAUUGCAGCGGAAGAG-GCGACCAAUCGGGCAU----UACUUA .(((((-.((...(((...((-----..((((((((((((.......-----------------.))))))))))))..)).-..)))...))...)))----)).... ( -21.90) >DroPse_CAF1 3837 101 - 1 AUAACGCCGAAAAGUCAAUUCGAUUCGAUUGUUGCAAUUUGAGACACAGA-------G-AAUCGAAAAUUGCAGCGGAAGAGGGCGGCCAAUCGGGCAUUCAUUACUGA ....(((((((.......)))..(((..((((((((((((..((......-------.-..))..))))))))))))..)))))))(((.....)))............ ( -27.00) >DroWil_CAF1 7295 76 - 1 AUA-------AAGACCCAAUC-----GAUUGUUGCAAUUUGAGACA----------------UGAAAAUUGCAGCGGAAGAG-GCGACCAAUCGGCCAU----UACUUU ..(-------(((......((-----..((((((((((((......----------------...))))))))))))..))(-((((....)).)))..----..)))) ( -18.10) >DroAna_CAF1 3874 99 - 1 AUAACGCCGAAAAGUCAAAUC-----GAUUGUUGCAAUUUGAGACACAGAGAAGAAAGAAACCGAAAAUUGCAGCGGAAGAG-GCGGCCAAUCAGGCGU----UACUUU .(((((((((...(((...((-----..((((((((((((..(...................)..))))))))))))..)).-..)))...)).)))))----)).... ( -26.61) >DroPer_CAF1 9180 96 - 1 AUAACGCCGAAAAGUCAAUUC-----GAUUGUUGCAAUUUGAGACACAGA-------G-AAUCGAAAAUUGCAGCGGAAGAGGGCGGCCAAUCGGGCAUUCAUUACUGA ....((((((....))..(((-----..((((((((((((..((......-------.-..))..))))))))))))..)))))))(((.....)))............ ( -26.40) >consensus AUAACGCCGAAAAGUCAAAUC_____GAUUGUUGCAAUUUGAGACACAGA_______G_AA_CGAAAAUUGCAGCGGAAGAG_GCGGCCAAUCGGGCAU____UACUUA ..........................((((((((((((((.........................))))))))))((..(....)..))))))................ (-13.44 = -13.44 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:48 2006