Locus 3819

Sequence ID 2R_DroMel_CAF1
Location 12,599,522 – 12,599,629
Length 107
Max. P 0.575047
window6168

overview

Window 8

Location 12,599,522 – 12,599,629
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -22.33
Consensus MFE -19.08
Energy contribution -18.88
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.26
Structure conservation index 0.85
SVM decision value 0.08
SVM RNA-class probability 0.575047
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12599522 107 - 20766785
CGACUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGUUCGACAAUGCAGCUGCAGAGGG-AAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU
.......(((((((.....((((((((.....((((....((((.....)))).))))..(....).-....))))))))..)))))))..(((....)))....... ( -19.90)
>DroSec_CAF1 26982 108 - 1
CAGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUAGACAAUGCAGCUGCAGAGGGGAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU
((((...(((((((.....((((((((......(((.((..((((........)))).))))).........))))))))..)))))))..))))...(((....))) ( -22.46)
>DroSim_CAF1 26258 108 - 1
CAGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUAGACAAUGCAGCUGCAGAGGGAAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU
((((...(((((((.....((((((((......(((.((..((((........)))).))))).........))))))))..)))))))..))))...(((....))) ( -22.46)
>DroEre_CAF1 24405 105 - 1
CGUUUGCAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGGAAA--AACAACUCUAA-UGAUUCCGCUGAAAGGCAAAUGCU
(((((((..(((...((((((((((((......(((.((..((((........)))).))))).......--)))))))....-)))))....)))...))))))).. ( -23.02)
>DroYak_CAF1 25381 108 - 1
CGGUUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGAAAAACAACAACUCUAAUUGAUUCCGCUGAAAGGCAAAUGCU
.((....(((((((.((....((((((......(((.((..((((........)))).)))))......))))))....)).)))))))))(((....)))....... ( -23.80)
>consensus
CGGCUACAAUCAAUAAGUCAAGUUGUUAAAAUGCUGACAAAUUGCUCGACAAUGCAGCUGCAGAGGGAAAAAAACAACUUUAAUUGAUUCCGCUGAAAGGCAAAUGCU
.......(((((((.((...(((((((......(((.((..((((........)))).))))).........))))))))).)))))))..(((....)))....... (-19.08 = -18.88 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:44 2006