| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,581,644 – 12,581,753 |
| Length | 109 |
| Max. P | 0.670296 |
| Location | 12,581,644 – 12,581,753 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.68 |
| Mean single sequence MFE | -37.95 |
| Consensus MFE | -23.11 |
| Energy contribution | -22.12 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670296 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12581644 109 - 20766785 CA---UGAGCUCAAGUAAGAA---GUCCAAUUACUGCUACGAAUGUGGCUCCAAGUUCAUAUUCGAGACCGCCAAGUUCUGCAUGGAUUGCGGCUUGAGACGUGCUGAACUUUAG----- ((---((..(((((((....(---(((((.....(((..((((((((((.....).)))))))))(((.(.....).))))))))))))...))))))).))))...........----- ( -30.60) >DroVir_CAF1 10970 112 - 1 CA---UGAGCUCGAGCAUGAAAAUGUCCAAGUUCUGUCACGAAUGUGGCGCCAAGUUCGUCAUAGAGCACGCUAAAUUUUGCAUGGAUUGCGGCGUUCGACGCGUUGUGCUCUAA----- ..---.......(((((..(....(((((.(((((((.((((((.((....)).)))))).)))))))..((........)).))))).(((........))).)..)))))...----- ( -38.20) >DroPse_CAF1 6830 120 - 1 CAGCCUAAGUUCGAGUAUGAAGAUGUCCAAGUUCUGCCACGAGUGUGGCGGCAGGUUCAUCAUCGAGCACGCCAAGUUCUGCAUGGAGUGCGGCGUGCGGCGAAUGAUACUCUAAUCUCG ............((((((.(.((((..(.....(((((((....)))))))...)..)))).(((.(((((((.(.(((.....))).)..)))))))..))).).))))))........ ( -43.00) >DroGri_CAF1 10005 111 - 1 -A---UGACUGCCAGCAUGAAACUGUCCAAGUUUUGUCAUGAAUGUGGUGGCAAGUUUGUCAUAGAGCACGCCAAGUUUUGCAUGGAUUGCGGCGUCAGACGUGUCGUGCUCUAA----- -.---(((((((((.(((((((((.....)))))).........))).))))).....))))(((((((((.((.((((((((.....)))).....)))).)).))))))))).----- ( -36.10) >DroAna_CAF1 6962 112 - 1 CA---UGUCGUCGAGUAUGAAAAUGUCGAAAUUCUGCCACGAAUGUGGCGCCAAGUUCAUCGUAGAACAGGCCAAAUUCUGCAUGGAAUGCGGAGUGCGGCGGAUGGUACUCUAG----- ..---.......((((((.(...(((((.......(((((....)))))(((..((((......)))).)))...(((((((((...))))))))).)))))..).))))))...----- ( -36.80) >DroPer_CAF1 6821 120 - 1 CAGCCUAAGUUCGAGUAUGAAGAUGUCCAAGUUCUGCCACGAGUGUGGCGGCAGGUUCAUCAUCGAGCACGCCAAGUUCUGCAUGGAGUGCGGCGUGCGGCGAAUGAUACUCUAAUCUCG ............((((((.(.((((..(.....(((((((....)))))))...)..)))).(((.(((((((.(.(((.....))).)..)))))))..))).).))))))........ ( -43.00) >consensus CA___UGAGUUCGAGUAUGAAAAUGUCCAAGUUCUGCCACGAAUGUGGCGCCAAGUUCAUCAUAGAGCACGCCAAGUUCUGCAUGGAUUGCGGCGUGCGACGAAUGGUACUCUAA_____ ............((((((.(...((((.......((((..((((.(((((....((((......)))).))))).)))).(((.....)))))))...))))..).))))))........ (-23.11 = -22.12 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:35 2006