| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,578,885 – 12,578,997 |
| Length | 112 |
| Max. P | 0.705961 |
| Location | 12,578,885 – 12,578,997 |
|---|---|
| Length | 112 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 86.38 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -13.72 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.705961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12578885 112 - 20766785 AAUUUA-AUUGCCCUUGUAAGCGAAAGUAUACUUUUCUCCAAAGAAUAUAUUUUAAUCGUUUUUCGAUAUCCGUUUAUAAUAAAAUAUAAGCUAUCAGGCUCGCAAAUCAUCA ......-.((((..(((((((((((((((((...((((....)))))))))))).((((.....))))...))))))))).........((((....)))).))))....... ( -20.10) >DroSec_CAF1 4088 98 - 1 AAUUUACUUUGCCCUUGUAAGCGAAAGUAUACUUUUCUCCAAAGAUUAUAUUUUAAUCGUUUUUCGAUAUCCGUUUAUGAUCAAAU---------------CCUAAAUCAUCA .......((((...(..((((((((((((((.((((.....)))).)))))))).((((.....))))...))))))..).)))).---------------............ ( -13.80) >DroSim_CAF1 4370 97 - 1 AAUUUA-UUUGCCCUUGUAAGCGAAAGUAUACUUUUCUCCAAAGAUUAUAUUUUAAUCGUUUUUCGAUAUCCGUUUAUGAUCAAAU---------------CCUAAAUCAUCA .....(-((((...(..((((((((((((((.((((.....)))).)))))))).((((.....))))...))))))..).)))))---------------............ ( -14.50) >consensus AAUUUA_UUUGCCCUUGUAAGCGAAAGUAUACUUUUCUCCAAAGAUUAUAUUUUAAUCGUUUUUCGAUAUCCGUUUAUGAUCAAAU_______________CCUAAAUCAUCA ..............(((((((((((((((((.((((.....)))).)))))))).((((.....))))...)))))))))................................. (-13.72 = -13.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:34 2006