| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,567,031 – 12,567,136 |
| Length | 105 |
| Max. P | 0.670642 |
| Location | 12,567,031 – 12,567,136 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.45 |
| Mean single sequence MFE | -43.10 |
| Consensus MFE | -24.08 |
| Energy contribution | -24.28 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670642 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12567031 105 - 20766785 GCCCACGAGCAGCUCACUCUCCACACUCAGGAUGCUGC---UUUUUGGCU---UGAGACGGGUGGGCCGCUUGUCGGGCAUCUUGGCCAGACAGGCGGGCGACUCGUUGGA (((...(((((((......(((.......))).)))))---))...))).---...(((((((.(.(((((((((.(((......))).))))))))).).)))))))... ( -52.30) >DroVir_CAF1 3406 108 - 1 GGCGACCACCAGCUCGCUUUCCACGCACAAUAUGCUGGGCGGCUUGGGCU---UGAGCCUGGUCUGCCGCUUGUCCGGCAUUUUGCUGAGGCAGGCAGGCGUCUCGUUGGC (((((((((.(((.(((...(((.(((.....)))))))))))).)(((.---...)))))))).((((((((((((((.....)))).))))))).))))))........ ( -47.40) >DroPse_CAF1 2748 105 - 1 GCCCACCAGCAGUUCGCUCUCCACACUCAAAAUACUGG---UCUUUGGCU---UAAGACGAGACUGUCGCUUGUCCGGCAUCUUGCUGAGACAGGCAGGCGUCUCAUUGGA .....((((((((....................))))(---((((.....---.)))))(((((.((((((((((((((.....)))).))))))).)))))))).)))). ( -36.75) >DroGri_CAF1 4077 108 - 1 GCUGACCACUAAUUCGCUCUCGACGCACAGUAAACUGGGCGGCUUUGGCU---UCAGGCGUGUCGGUCGUUUGUCGGGCAUUUUGCUGAGGCAGGCGGGCGUCUCGUUGGA .....(((......((((((((((((.(((....))).(((((....)))---....)))))))))..(((((((.(((.....)))..))))))))))))......))). ( -37.40) >DroAna_CAF1 2823 111 - 1 CCCCACCACCAACUCGCUCUCCACACUGAGUAUGCUGGAGACUUUGGGUUUCUGGAGUCGCGUGGGCCGCUUGUCGGGCAUCUUGGCCAGACAGGCGGGCGACUCAUUGGA ..(((.((..((((((.((((((((.......)).))))))...))))))..))(((((((.....(((((((((.(((......))).))))))))))))))))..))). ( -48.00) >DroPer_CAF1 2738 105 - 1 GUCCACCAGCAGUUCGCUCUCCACACUCAAAAUACUGG---UCUUUGGCU---UAAGACGAGACUGUCGCUUGUCCGGCAUCUUGCUGAGACAGGCAGGCGUCUCAUUGGA .....((((((((....................))))(---((((.....---.)))))(((((.((((((((((((((.....)))).))))))).)))))))).)))). ( -36.75) >consensus GCCCACCACCAGCUCGCUCUCCACACUCAAUAUACUGG___UCUUUGGCU___UGAGACGAGUCGGCCGCUUGUCCGGCAUCUUGCUGAGACAGGCAGGCGUCUCAUUGGA .....((((((((....................))))).....................(((((.((((((((((((((.....)))).))))))).))))))))..))). (-24.08 = -24.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:32 2006