| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,563,033 – 12,563,148 |
| Length | 115 |
| Max. P | 0.917171 |
| Location | 12,563,033 – 12,563,148 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.65 |
| Mean single sequence MFE | -38.94 |
| Consensus MFE | -18.57 |
| Energy contribution | -19.98 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.917171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12563033 115 - 20766785 -----UCCCACCAGGAGGUCAUUGGCACUGUGCUCCAUUUCAGUAUACAUUUUUCUGGCCAAUUCGGCCUGUGUGUUAGCCAGUUCAUAGAGGGCGAUAGCCUUCAAUCUGGAGAUUCCA -----.....(((((.....((((((((((..........))))((((((......((((.....)))).))))))..)))))).....((((((....))))))..)))))........ ( -36.60) >DroPse_CAF1 1447 119 - 1 UUCUGCC-CACCAGUAGCUCCCUAGAGCUCUGCUCCUGCUCACUGUAGAGCUUCCUGGCCAAUUCCGCCUGCGUGUUGGCCAAUUCGUAGAGGGCAAUGGCCUUUAGCCGAGAGAUUCCC (((((((-(.......((((....))))(((((....((((......))))....((((((((..((....)).))))))))....)))))))))..((((.....))))))))...... ( -43.30) >DroGri_CAF1 1349 115 - 1 -----ACUCACUAGCAAAUCCUGGGUACUCUGCUCCUGCUCGCUGAACAAUUUCCGGGCGAGCUCCGCCUGUGUGUUGGCCAGUUCAUAUAGAGCUAUAGCCUUUAGACGGGAUAUGCCC -----........(((.((((((..((....(((...((((((((..((((...((((((.....))))))...))))..)))).......))))...)))...))..)))))).))).. ( -38.31) >DroYak_CAF1 1336 115 - 1 -----UCUCACCAGAAGGUCAUUGGCACUAUGCUCCAUCUCAGUAUACAUUUUUCUGGCCAAUUCGGCUUGAGUGUUGGCCAGUUCAUAGAGGGCGAUAGCCUUUAAUCUGGAGAUUCCA -----..((.(((((.(((((...((((((((((.......))))))......((.((((.....)))).)))))))))))........((((((....))))))..))))).))..... ( -35.40) >DroAna_CAF1 1326 115 - 1 -----ACCCACCAAAAGAUCCCUGGCACUCUGCUCUUGUUCACUGUAGAGUUUUCUGGCCAACUCCGCCUGGGUAUUGGCCAACUCAUAAAGGGCUAUAGCCUUCAGCCUGGAGAUUCCA -----...........((((((.((((((((((...........)))))))....(((((((..((.....))..)))))))........(((((....)))))..))).)).))))... ( -37.60) >DroPer_CAF1 1559 120 - 1 UUCUGCCCCACCAGUAGCUCCCUAGAGCUCUGCUCCUGCUCACUGUAGAGCUUCCUGGCCAAUUCCGCCUGCGUGUUGGCCAAUUCGUAGAGGGCAAUGGCCUUUAGCCGAGAGAUUCCC ((((((((........((((....))))(((((....((((......))))....((((((((..((....)).))))))))....)))))))))..((((.....))))))))...... ( -42.40) >consensus _____ACCCACCAGAAGAUCCCUGGCACUCUGCUCCUGCUCACUGUACAGUUUCCUGGCCAAUUCCGCCUGCGUGUUGGCCAAUUCAUAGAGGGCAAUAGCCUUUAGCCGGGAGAUUCCA ................................((((((.................((((((((.(.......).)))))))).......((((((....))))))...))))))...... (-18.57 = -19.98 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:31 2006