Locus 3804

Sequence ID 2R_DroMel_CAF1
Location 12,549,295 – 12,549,394
Length 99
Max. P 0.500000
window6150

overview

Window 0

Location 12,549,295 – 12,549,394
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 81.29
Mean single sequence MFE -27.52
Consensus MFE -12.93
Energy contribution -13.22
Covariance contribution 0.28
Combinations/Pair 1.35
Mean z-score -2.48
Structure conservation index 0.47
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12549295 99 - 20766785
---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGCACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGAGGA
---.(((((..((-------((((((...........(((((((((.....)))))))))......(((((((((......))))......)))))))))))))))))) ( -32.70)
>DroSec_CAF1 10690 99 - 1
---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGAACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGCACUAGGAGUUUGGGAGGA
---.(((((((((-------(((.((.....)).))))))(((((((....(((....))).....(((((((((......))))......)))))))))))))))))) ( -28.00)
>DroSim_CAF1 10678 99 - 1
---UUCCUUUUUC-------AAAUUCAAAAUGAUUUUGAACAGGCUCAUUAAGCUUGUGCUAUUUUCCAGUACCAUUUACUUGGUCAAAGCACUAGGAGUUUGGGAGGA
---.(((((((((-------(((.((.....)).))))))(((((((......((.(((((.....((((((.....))).)))....))))).))))))))))))))) ( -26.80)
>DroEre_CAF1 10524 98 - 1
---UUCCU-UUUC-------AAAUUCAAAAUGAUCAUGCGCAGGCUCAUGAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGACGA
---...(.-(..(-------((((((...........(((((((((.....)))))))))......(((((((((......))))......))))))))))))..).). ( -29.60)
>DroYak_CAF1 10761 98 - 1
---UUCCU-UUUC-------AAAUUCAAAAUGGUCAUACGCAGCCUCAUAAAGCUUGUGCUAUUUUCUACUACCAUUUACUUGGCCAAAGAACUAGGAGUUUGGGACGA
---...(.-(..(-------((((((.((((((.((((.((...........)).))))))))))(((....(((......)))....))).....)))))))..).). ( -19.50)
>DroAna_CAF1 10105 109 - 1
GAAUUCCGAGUUCUAGGCAAGAUUUCAAUAUGAUUUUGGGCAGAUUCGUAAGGUUCUUGGUCUUCGCCAGCACUAUCUACUUGGCCAAGGAAUUCGGCAGUUGGGAUGA
.(((((((((((((...(((((((.......)))))))((((((..(....)..)))((((....))))..............)))..))))))))).))))....... ( -28.50)
>consensus
___UUCCUUUUUC_______AAAUUCAAAAUGAUUUUGCACAGGCUCAUUAAGCUUGUGCUAUUUUCUAGUACCAUUUACUUGGUCAAAGAACUAGGAGUUUGGGAGGA
....((((............((((((.............(((((((.....)))))))........(((((((((......))))......)))))))))))))))... (-12.93 = -13.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:26 2006