Locus 380

Sequence ID 2R_DroMel_CAF1
Location 2,361,991 – 2,362,111
Length 120
Max. P 0.749448
window747

overview

Window 7

Location 2,361,991 – 2,362,111
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.57
Mean single sequence MFE -34.50
Consensus MFE -27.64
Energy contribution -29.08
Covariance contribution 1.44
Combinations/Pair 1.12
Mean z-score -1.61
Structure conservation index 0.80
SVM decision value 0.47
SVM RNA-class probability 0.749448
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2361991 120 - 20766785
UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG
....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80)
>DroSec_CAF1 11527 120 - 1
UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG
....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80)
>DroSim_CAF1 11638 120 - 1
UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG
....(((((.....)))))(((((((((((..(((((((..(....)....))))))).....(((((((...))))))))))))))).((.(((......))).)).........))). ( -37.80)
>DroEre_CAF1 11406 118 - 1
UAAUGACUGCCCACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAAAUUCGCUGGCACAACUGACAGGGCACAAAGUGCUUAAC--UGCCAACGGCCUAAAUCGAUAGCAUACUUAACGGGU
........((((((((((.....)))).))...((((((((((...(((.((((((....)...((((((...))))))...--))))).)))......))))).)))))......)))) ( -29.10)
>DroYak_CAF1 11017 118 - 1
UAAUGACUUCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUUGCACAACUGACAGAGCAUUAAGUGCUUAAC--GGCCAACUGUCUAAAUCGAUAGCAUACUUAAUGGGG
........((((...(((....((((((((..(((((((............)))))))...)).((((((...)))))).))--))))..(((((......)))))...)))...)))). ( -30.00)
>consensus
UAAUGACUGCCAACCAGUUCUCGGCUGUGUAAUUGUGCGUUGAACUCUGCUCGCACAACUGACUGAGCAUAAAGUGCUUAACACAGCCAGCAGUCUAAAUCGAUAGCAUACUUAAUGGGG
....(((((.....)))))(((((((((((..(((((((............)))))))......((((((...)))))).)))))))).((.(((......))).)).........))). (-27.64 = -29.08 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:59 2006