Locus 3799

Sequence ID 2R_DroMel_CAF1
Location 12,544,855 – 12,544,946
Length 91
Max. P 0.623228
window6145

overview

Window 5

Location 12,544,855 – 12,544,946
Length 91
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 89.46
Mean single sequence MFE -27.98
Consensus MFE -22.14
Energy contribution -22.78
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.623228
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12544855 91 + 20766785
---CACUGGUGUUGUCGUCUGAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUUAGGCAGC
---.............(((((((((..((((((....))))....((((((((((....)))))))..)))......))...)))))))))... ( -30.80)
>DroSec_CAF1 6323 91 + 1
---CGCUGGUGUUGUCGUCUAACUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGCCAACGGGCUGCAGCAAGAUUUCCUCAAAAUAAGGCAGC
---.((((.(((((..(((((.....)))))..)))))((..((.((((((((((....)))))))..))).))...))...........)))) ( -29.70)
>DroSim_CAF1 6340 91 + 1
---CGCUGGUGUUGUCGUCUAAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUACGGCAGC
---.......((((((((....((((.((((((....))))....((((((((((....)))))))..)))......)).))))..)))))))) ( -32.30)
>DroEre_CAF1 6329 93 + 1
UCACCAUGGUGUUGUUGUCUCAUUUGUGGGCCUUAACAGGUUUUAC-UCAGCCCGUCAACGGGCUGCAUCAAGAUUUCCUCAAAAUUAGGCAGC
.(((....)))..(((((((..((((.((((((....)))).....-.(((((((....)))))))...........)).))))...))))))) ( -30.00)
>DroYak_CAF1 6412 93 + 1
UCACCAUGGUGUUGUCGUCUGAUUUGUGGGCCUUAACAGGUUUUAC-UCAGCCCGUCAACUAGCUGCAUCAAGAUUUCCUCAAAAUUAGCCAGC
......((((((((.((.((((.....((((((....))))))...-))))..)).))))...((......))...............)))).. ( -17.10)
>consensus
___CCCUGGUGUUGUCGUCUAAUUUGUGGGCCUUAACAGGUUUUAUGCCAGCCCGUCAACGGGCUGCAGCAAGAUUUCCUCAAAAUUAGGCAGC
..........((((((......((((.((((((....)))).......(((((((....)))))))...........)).))))....)))))) (-22.14 = -22.78 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:20 2006