Locus 3795

Sequence ID 2R_DroMel_CAF1
Location 12,531,829 – 12,531,924
Length 95
Max. P 0.542517
window6140

overview

Window 0

Location 12,531,829 – 12,531,924
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.28
Mean single sequence MFE -23.55
Consensus MFE -14.98
Energy contribution -15.90
Covariance contribution 0.92
Combinations/Pair 1.23
Mean z-score -1.76
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.542517
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12531829 95 + 20766785
-------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUUUCCGCGUCGAUUUCUAGGUCGGCACCAUCCCC
-------------.(((..((((((..((...))..))))))..)))....((((.(((..(..((..(((........)))..))...)..))).))))........ ( -25.50)
>DroVir_CAF1 11182 105 + 1
UUUCUUGUUUGCCUGCGA---UUGUUUUCCUUGUUUACAGAAGUCCUUGUAAGCACGCUCAGUCUCUUCGUCCAUUUCCGGGUCGAGAUCCAAAUCGUUAUCUCUUAC
..............((((---((........(((((((((......)))))))))......(..((((..(((......)))..))))..).)))))).......... ( -19.30)
>DroSec_CAF1 8693 95 + 1
-------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUCUCCUCGUCCAUCUCUGCGUCCAUUUCCAGGUCGGCACCAUCCCC
-------------.(((..((((((..((...))..))))))..)))....((((.((..((......(((........))).......))..)).))))........ ( -23.82)
>DroSim_CAF1 8866 95 + 1
-------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUCUCUGCGUCCAUUUCCAGGUCGGCACCAUCCCC
-------------.(((..((((((..((...))..))))))..)))....((((.((..((......(((........))).......))..)).))))........ ( -23.82)
>DroEre_CAF1 8979 95 + 1
-------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAGGCCCGCUCGGUUUCCUCGUCCAUCUCGGCGUCCAUUUCCAAGUCGGCAGCAUCCCC
-------------.(((..((((((..((...))..))))))..)))(((..(((.(((.((......((((......)))).......)).))).))).)))..... ( -26.42)
>DroYak_CAF1 8820 95 + 1
-------------UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAGGCCCGCUCGGUUUCCUCGUCCAUCUCGGCAUCCAUUUCCAGGUCGGCACCAUCCCC
-------------.(((..((((((..((...))..))))))..))).....(((.((..((.........((.....)).........))..)).)))......... ( -22.47)
>consensus
_____________UAGGUCUUCUGUUUGCCCUGCUUACAGAACUCCUUGUAUGCCCGCUCGGUUUCCUCGUCCAUCUCCGCGUCCAUUUCCAGGUCGGCACCAUCCCC
..............(((..((((((..((...))..))))))..))).....(((.(((.((......(((........))).......)).))).)))......... (-14.98 = -15.90 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:15 2006